RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PPP4R2Q9NY27 417 aa22.19■■□□□ 1.14
SHANK1-201ENST00000293441 CSB-PGBD3P0DP91 1061 aa22.17■■□□□ 1.14
SHANK1-201ENST00000293441 PLCB2Q00722 1185 aa22.17■■□□□ 1.14
SHANK1-201ENST00000293441 SETD5Q9C0A6 1442 aa22.16■■□□□ 1.14
SHANK1-201ENST00000293441 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
SHANK1-201ENST00000293441 HSPA5P11021 654 aaKnown RBP22.15■■□□□ 1.14
SHANK1-201ENST00000293441 DNTTIP2Q5QJE6 756 aaKnown RBP22.15■■□□□ 1.14
SHANK1-201ENST00000293441 CCDC88BA6NC98 1476 aa22.15■■□□□ 1.14
SHANK1-201ENST00000293441 ZNF330Q9Y3S2 320 aaPredicted RBP22.13■■□□□ 1.13
SHANK1-201ENST00000293441 B4GALNT3Q6L9W6 998 aa22.12■■□□□ 1.13
SHANK1-201ENST00000293441 ROCK2O75116 1388 aaKnown RBP22.12■■□□□ 1.13
SHANK1-201ENST00000293441 EFCAB2Q5VUJ9 269 aa22.12■■□□□ 1.13
SHANK1-201ENST00000293441 ISY1Q9ULR0 285 aaKnown RBP22.12■■□□□ 1.13
SHANK1-201ENST00000293441 SMARCA2P51531 1590 aa22.11■■□□□ 1.13
SHANK1-201ENST00000293441 KANK4Q5T7N3 995 aaPredicted RBP22.09■■□□□ 1.13
SHANK1-201ENST00000293441 APBB1O00213 710 aa22.09■■□□□ 1.13
SHANK1-201ENST00000293441 NUP155O75694 1391 aa22.09■■□□□ 1.13
SHANK1-201ENST00000293441 KTN1Q86UP2 1357 aaKnown RBP22.08■■□□□ 1.13
SHANK1-201ENST00000293441 CCDC9Q9Y3X0 531 aaKnown RBP22.08■■□□□ 1.13
SHANK1-201ENST00000293441 NUTM2DQ5VT03 806 aaPredicted RBP22.07■■□□□ 1.12
SHANK1-201ENST00000293441 MROH2BQ7Z745 1585 aa22.07■■□□□ 1.12
SHANK1-201ENST00000293441 KIF3BO15066 747 aa22.07■■□□□ 1.12
SHANK1-201ENST00000293441 HNRNPMP52272 730 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHANK1-201ENST00000293441 U2AF1L5P0DN76 240 aaPredicted RBP22.05■■□□□ 1.12
SHANK1-201ENST00000293441 U2AF1Q01081 240 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHANK1-201ENST00000293441 MPHOSPH9Q99550 1183 aa22.04■■□□□ 1.12
SHANK1-201ENST00000293441 MCCP23508 829 aa22.03■■□□□ 1.12
SHANK1-201ENST00000293441 VPS8Q8N3P4 1428 aa22.03■■□□□ 1.12
SHANK1-201ENST00000293441 ANKRD30AQ9BXX3 1397 aa22.03■■□□□ 1.12
SHANK1-201ENST00000293441 HSCBQ8IWL3 235 aa22.02■■□□□ 1.12
SHANK1-201ENST00000293441 GOLGA6L4A6NEF3 574 aa22.02■■□□□ 1.12
SHANK1-201ENST00000293441 FMN1Q68DA7 1419 aa22.02■■□□□ 1.11
SHANK1-201ENST00000293441 CLSTN1O94985 981 aa22.01■■□□□ 1.11
SHANK1-201ENST00000293441 SPRYD3Q8NCJ5 442 aa22.01■■□□□ 1.11
SHANK1-201ENST00000293441 GOLGA6L6A8MZA4 724 aa22■■□□□ 1.11
SHANK1-201ENST00000293441 EID1Q9Y6B2 187 aa22■■□□□ 1.11
SHANK1-201ENST00000293441 TIMELESSQ9UNS1 1208 aa21.99■■□□□ 1.11
SHANK1-201ENST00000293441 IPO8O15397 1037 aaKnown RBP21.97■■□□□ 1.11
SHANK1-201ENST00000293441 WASHC2CQ9Y4E1 1318 aa21.97■■□□□ 1.11
SHANK1-201ENST00000293441 CALD1Q05682 793 aaKnown RBP21.96■■□□□ 1.11
SHANK1-201ENST00000293441 EIF3AQ14152 1382 aaKnown RBP21.95■■□□□ 1.1
SHANK1-201ENST00000293441 ITPRIPQ8IWB1 547 aa21.95■■□□□ 1.1
SHANK1-201ENST00000293441 NOP58Q9Y2X3 529 aaKnown RBP21.95■■□□□ 1.1
SHANK1-201ENST00000293441 SPAG9O60271 1321 aaKnown RBP21.95■■□□□ 1.1
SHANK1-201ENST00000293441 NGDNQ8NEJ9 315 aaKnown RBP21.94■■□□□ 1.1
SHANK1-201ENST00000293441 RAB3GAP2Q9H2M9 1393 aa21.94■■□□□ 1.1
SHANK1-201ENST00000293441 GNL2Q13823 731 aaKnown RBP21.94■■□□□ 1.1
SHANK1-201ENST00000293441 NUTM2FA1L443 756 aa21.93■■□□□ 1.1
SHANK1-201ENST00000293441 CHMP3Q9Y3E7 222 aa21.92■■□□□ 1.1
SHANK1-201ENST00000293441 KIAA1211Q6ZU35 1233 aa21.92■■□□□ 1.1
SHANK1-201ENST00000293441 WIZO95785 1651 aa21.91■■□□□ 1.1
SHANK1-201ENST00000293441 TMX4Q9H1E5 349 aaPredicted RBP21.91■■□□□ 1.1
SHANK1-201ENST00000293441 CCER2I3L3R5 266 aa21.91■■□□□ 1.1
SHANK1-201ENST00000293441 NCBP3Q53F19 620 aaKnown RBP21.9■■□□□ 1.1
SHANK1-201ENST00000293441 TERF2IPQ9NYB0 399 aa21.89■■□□□ 1.1
SHANK1-201ENST00000293441 FHOD3Q2V2M9 1422 aa21.89■■□□□ 1.1
SHANK1-201ENST00000293441 LTV1Q96GA3 475 aaPredicted RBP21.89■■□□□ 1.09
SHANK1-201ENST00000293441 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.87■■□□□ 1.09
SHANK1-201ENST00000293441 STK31Q9BXU1 1019 aa21.87■■□□□ 1.09
SHANK1-201ENST00000293441 RALBP1Q15311 655 aa21.87■■□□□ 1.09
SHANK1-201ENST00000293441 TAF7LQ5H9L4 462 aa21.87■■□□□ 1.09
SHANK1-201ENST00000293441 CFAP44Q96MT7 982 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 NRDCO43847 1150 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 GORABQ5T7V8 394 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 AMPHP49418 695 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 CCDC146Q8IYE0 955 aa21.85■■□□□ 1.09
SHANK1-201ENST00000293441 NAP1L5Q96NT1 182 aaPredicted RBP21.84■■□□□ 1.09
SHANK1-201ENST00000293441 RCAN3Q9UKA8 241 aa21.84■■□□□ 1.09
SHANK1-201ENST00000293441 CCDC18Q5T9S5 1454 aa21.84■■□□□ 1.09
SHANK1-201ENST00000293441 JPH4Q96JJ6 628 aa21.84■■□□□ 1.09
SHANK1-201ENST00000293441 RAPGEF2Q9Y4G8 1499 aa21.83■■□□□ 1.08
SHANK1-201ENST00000293441 TRAK1Q9UPV9 953 aa21.82■■□□□ 1.08
SHANK1-201ENST00000293441 DRC7Q8IY82 874 aa21.82■■□□□ 1.08
SHANK1-201ENST00000293441 SLC4A10Q6U841 1118 aa21.81■■□□□ 1.08
SHANK1-201ENST00000293441 SMC4Q9NTJ3 1288 aa21.81■■□□□ 1.08
SHANK1-201ENST00000293441 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
SHANK1-201ENST00000293441 ERICH6BQ5W0A0 696 aa21.8■■□□□ 1.08
SHANK1-201ENST00000293441 RWDD1Q9H446 243 aaPredicted RBP21.8■■□□□ 1.08
SHANK1-201ENST00000293441 CADPSQ9ULU8 1353 aa21.79■■□□□ 1.08
SHANK1-201ENST00000293441 G3V3G9 751 aa21.79■■□□□ 1.08
SHANK1-201ENST00000293441 DCAF8Q5TAQ9 597 aa21.79■■□□□ 1.08
SHANK1-201ENST00000293441 RTN4Q9NQC3 1192 aaKnown RBP21.79■■□□□ 1.08
SHANK1-201ENST00000293441 RSPH4AQ5TD94 716 aa21.77■■□□□ 1.08
SHANK1-201ENST00000293441 L3MBTL2Q969R5 705 aa21.77■■□□□ 1.08
SHANK1-201ENST00000293441 TRIM6-TRIM34B2RNG4 842 aa21.76■■□□□ 1.07
SHANK1-201ENST00000293441 CHMP4AQ9BY43 222 aa21.76■■□□□ 1.07
SHANK1-201ENST00000293441 GPATCH3Q96I76 525 aa21.76■■□□□ 1.07
SHANK1-201ENST00000293441 CYB5RLQ6IPT4 315 aa21.74■■□□□ 1.07
SHANK1-201ENST00000293441 CLUAP1Q96AJ1 413 aa21.72■■□□□ 1.07
SHANK1-201ENST00000293441 PMFBP1Q8TBY8 1022 aa21.71■■□□□ 1.07
SHANK1-201ENST00000293441 HSP90B1P14625 803 aaKnown RBP21.71■■□□□ 1.07
SHANK1-201ENST00000293441 GTF2E1P29083 439 aaPredicted RBP21.7■■□□□ 1.07
SHANK1-201ENST00000293441 LMOD3Q0VAK6 560 aa21.7■■□□□ 1.06
SHANK1-201ENST00000293441 HMMRO75330 724 aa21.69■■□□□ 1.06
SHANK1-201ENST00000293441 CHAF1AQ13111 956 aaPredicted RBP21.68■■□□□ 1.06
SHANK1-201ENST00000293441 MFAP1P55081 439 aaKnown RBP21.68■■□□□ 1.06
SHANK1-201ENST00000293441 EVA1CP58658 441 aa21.68■■□□□ 1.06
SHANK1-201ENST00000293441 FRAT2O75474 233 aaPredicted RBP21.67■■□□□ 1.06
SHANK1-201ENST00000293441 HDAC5Q9UQL6 1122 aa21.67■■□□□ 1.06
SHANK1-201ENST00000293441 MSNP26038 577 aaKnown RBP21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms