RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 PPRC1Q5VV67 1664 aaKnown RBP18.62■□□□□ 0.57
CPSF6-201ENST00000266679 EPRSP07814 1512 aaKnown RBP18.62■□□□□ 0.57
CPSF6-201ENST00000266679 HFM1A2PYH4 1435 aa18.61■□□□□ 0.57
CPSF6-201ENST00000266679 KDM6BO15054 1643 aa18.6■□□□□ 0.57
CPSF6-201ENST00000266679 ABCA8O94911 1581 aa18.59■□□□□ 0.57
CPSF6-201ENST00000266679 NAIPQ13075 1403 aa18.57■□□□□ 0.56
CPSF6-201ENST00000266679 ARID3CA6NKF2 412 aa18.56■□□□□ 0.56
CPSF6-201ENST00000266679 GLI2P10070 1586 aa18.56■□□□□ 0.56
CPSF6-201ENST00000266679 TCOF1Q13428 1488 aaKnown RBP18.55■□□□□ 0.56
CPSF6-201ENST00000266679 MAP3K4Q9Y6R4 1608 aa18.54■□□□□ 0.56
CPSF6-201ENST00000266679 GCC2Q8IWJ2 1684 aa18.54■□□□□ 0.56
CPSF6-201ENST00000266679 WDR7Q9Y4E6 1490 aa18.52■□□□□ 0.55
CPSF6-201ENST00000266679 TIMELESSQ9UNS1 1208 aa18.5■□□□□ 0.55
CPSF6-201ENST00000266679 RAPGEF6Q8TEU7 1601 aa18.49■□□□□ 0.55
CPSF6-201ENST00000266679 AEBP2Q6ZN18 517 aaPredicted RBP18.49■□□□□ 0.55
CPSF6-201ENST00000266679 RRP7BPQ9NSQ0 103 aa18.47■□□□□ 0.55
CPSF6-201ENST00000266679 CHIC2Q9UKJ5 165 aa18.47■□□□□ 0.55
CPSF6-201ENST00000266679 TONSLQ96HA7 1378 aa18.46■□□□□ 0.55
CPSF6-201ENST00000266679 PPP1R15AO75807 674 aaPredicted RBP18.46■□□□□ 0.55
CPSF6-201ENST00000266679 MIA2Q96PC5 1412 aa18.45■□□□□ 0.54
CPSF6-201ENST00000266679 KCNH8Q96L42 1107 aa18.45■□□□□ 0.54
CPSF6-201ENST00000266679 NUP153P49790 1475 aaKnown RBP18.45■□□□□ 0.54
CPSF6-201ENST00000266679 COL17A1Q9UMD9 1497 aaPredicted RBP18.43■□□□□ 0.54
CPSF6-201ENST00000266679 ATP10BO94823 1461 aa18.42■□□□□ 0.54
CPSF6-201ENST00000266679 AKNAQ7Z591 1439 aa18.42■□□□□ 0.54
CPSF6-201ENST00000266679 HIRIP3Q9BW71 556 aaPredicted RBP18.39■□□□□ 0.54
CPSF6-201ENST00000266679 DDX10Q13206 875 aaKnown RBP18.39■□□□□ 0.53
CPSF6-201ENST00000266679 TEX14Q8IWB6 1497 aa18.38■□□□□ 0.53
CPSF6-201ENST00000266679 DNMT1P26358 1616 aaKnown RBP18.37■□□□□ 0.53
CPSF6-201ENST00000266679 PELP1Q8IZL8 1130 aaKnown RBP18.37■□□□□ 0.53
CPSF6-201ENST00000266679 TRIM52Q96A61 297 aa18.37■□□□□ 0.53
CPSF6-201ENST00000266679 CD109Q6YHK3 1445 aa18.37■□□□□ 0.53
CPSF6-201ENST00000266679 DENND4BO75064 1496 aaPredicted RBP18.36■□□□□ 0.53
CPSF6-201ENST00000266679 DAPK1P53355 1430 aa18.36■□□□□ 0.53
CPSF6-201ENST00000266679 ITSN2Q9NZM3 1697 aa18.32■□□□□ 0.52
CPSF6-201ENST00000266679 CDK11AQ9UQ88 783 aaPredicted RBP18.31■□□□□ 0.52
CPSF6-201ENST00000266679 ABCC5O15440 1437 aa18.31■□□□□ 0.52
CPSF6-201ENST00000266679 TROQ12816 1431 aaPredicted RBP18.31■□□□□ 0.52
CPSF6-201ENST00000266679 KIF14Q15058 1648 aa18.31■□□□□ 0.52
CPSF6-201ENST00000266679 ABCA9Q8IUA7 1624 aa18.31■□□□□ 0.52
CPSF6-201ENST00000266679 ZNF644Q9H582 1327 aaPredicted RBP18.31■□□□□ 0.52
CPSF6-201ENST00000266679 KDM4FA0A1W2PPD8 638 aa18.3■□□□□ 0.52
CPSF6-201ENST00000266679 ROCK1Q13464 1354 aa18.28■□□□□ 0.52
CPSF6-201ENST00000266679 CAMSAP2Q08AD1 1489 aa18.27■□□□□ 0.52
CPSF6-201ENST00000266679 MPHOSPH9Q99550 1183 aa18.27■□□□□ 0.52
CPSF6-201ENST00000266679 ADGBQ8N7X0 1667 aa18.26■□□□□ 0.51
CPSF6-201ENST00000266679 CROCC2H7BZ55 1655 aa18.24■□□□□ 0.51
CPSF6-201ENST00000266679 FOXD1Q16676 465 aa18.23■□□□□ 0.51
CPSF6-201ENST00000266679 ADGRL1O94910 1474 aa18.23■□□□□ 0.51
CPSF6-201ENST00000266679 GPATCH8Q9UKJ3 1502 aaKnown RBP18.22■□□□□ 0.51
CPSF6-201ENST00000266679 TTC37Q6PGP7 1564 aa18.21■□□□□ 0.51
CPSF6-201ENST00000266679 CFDP1Q9UEE9 299 aaPredicted RBP18.21■□□□□ 0.5
CPSF6-201ENST00000266679 CDC42BPAQ5VT25 1732 aa18.19■□□□□ 0.5
CPSF6-201ENST00000266679 ANP32CO43423 234 aa18.19■□□□□ 0.5
CPSF6-201ENST00000266679 ZNF777Q9ULD5 760 aaPredicted RBP18.18■□□□□ 0.5
CPSF6-201ENST00000266679 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.18■□□□□ 0.56e-7■■□□□ 12.9
CPSF6-201ENST00000266679 ARAP3Q8WWN8 1544 aa18.17■□□□□ 0.5
CPSF6-201ENST00000266679 PLEKHD1A6NEE1 506 aa18.16■□□□□ 0.5
CPSF6-201ENST00000266679 ANKRD30BQ9BXX2 1392 aa18.16■□□□□ 0.5
CPSF6-201ENST00000266679 FRMPD1Q5SYB0 1578 aa18.16■□□□□ 0.5
CPSF6-201ENST00000266679 RPRD2Q5VT52 1461 aaKnown RBP18.14■□□□□ 0.5
CPSF6-201ENST00000266679 RAPGEF3O95398 923 aa18.14■□□□□ 0.49
CPSF6-201ENST00000266679 HSPA5P11021 654 aaKnown RBP18.14■□□□□ 0.49
CPSF6-201ENST00000266679 L3MBTL2Q969R5 705 aa18.14■□□□□ 0.49
CPSF6-201ENST00000266679 ADGRL2O95490 1459 aa18.13■□□□□ 0.49
CPSF6-201ENST00000266679 PZPP20742 1482 aa18.13■□□□□ 0.49
CPSF6-201ENST00000266679 CCER2I3L3R5 266 aa18.13■□□□□ 0.49
CPSF6-201ENST00000266679 SLC4A1APQ9BWU0 796 aaKnown RBP18.13■□□□□ 0.49
CPSF6-201ENST00000266679 NCOA1Q15788 1441 aa18.13■□□□□ 0.49
CPSF6-201ENST00000266679 NEO1Q92859 1461 aa18.12■□□□□ 0.49
CPSF6-201ENST00000266679 SUPT16HQ9Y5B9 1047 aaKnown RBP18.12■□□□□ 0.49
CPSF6-201ENST00000266679 RICTORQ6R327 1708 aa18.09■□□□□ 0.49
CPSF6-201ENST00000266679 FANCAO15360 1455 aa18.09■□□□□ 0.49
CPSF6-201ENST00000266679 EIF4G2P78344 907 aaKnown RBP eCLIP18.08■□□□□ 0.48
CPSF6-201ENST00000266679 ANKRD30AQ9BXX3 1397 aa18.08■□□□□ 0.48
CPSF6-201ENST00000266679 WASHC2AQ641Q2 1341 aa18.08■□□□□ 0.48
CPSF6-201ENST00000266679 CFAP74Q9C0B2 1584 aa18.07■□□□□ 0.48
CPSF6-201ENST00000266679 MYO5CQ9NQX4 1742 aa18.07■□□□□ 0.48
CPSF6-201ENST00000266679 SHANK2Q9UPX8 1470 aa18.05■□□□□ 0.48
CPSF6-201ENST00000266679 NBPF8Q3BBV2 869 aa18.04■□□□□ 0.48
CPSF6-201ENST00000266679 C9orf84Q5VXU9 1444 aa18.04■□□□□ 0.48
CPSF6-201ENST00000266679 KIAA1107Q9UPP5 1409 aa18.03■□□□□ 0.48
CPSF6-201ENST00000266679 ANKRD50Q9ULJ7 1429 aa18.03■□□□□ 0.48
CPSF6-201ENST00000266679 ARHGEF40Q8TER5 1519 aa18.01■□□□□ 0.47
CPSF6-201ENST00000266679 PREX2Q70Z35 1606 aa18.01■□□□□ 0.47
CPSF6-201ENST00000266679 CDC42BPBQ9Y5S2 1711 aa18.01■□□□□ 0.47
CPSF6-201ENST00000266679 CNTLNQ9NXG0 1405 aa18■□□□□ 0.47
CPSF6-201ENST00000266679 POLR1AO95602 1720 aaPredicted RBP18■□□□□ 0.47
CPSF6-201ENST00000266679 SIGLEC1Q9BZZ2 1709 aa18■□□□□ 0.47
CPSF6-201ENST00000266679 ARHGEF5Q12774 1597 aa17.99■□□□□ 0.47
CPSF6-201ENST00000266679 PLCH2O75038 1416 aa17.99■□□□□ 0.47
CPSF6-201ENST00000266679 SAMD9LQ8IVG5 1584 aa17.99■□□□□ 0.47
CPSF6-201ENST00000266679 PKD2Q13563 968 aa17.98■□□□□ 0.47
CPSF6-201ENST00000266679 MBD5Q9P267 1494 aa17.98■□□□□ 0.47
CPSF6-201ENST00000266679 CCDC7Q96M83 1385 aa17.98■□□□□ 0.47
CPSF6-201ENST00000266679 BCORL1Q5H9F3 1711 aa17.97■□□□□ 0.47
CPSF6-201ENST00000266679 C11orf95C9JLR9 678 aaPredicted RBP17.96■□□□□ 0.47
CPSF6-201ENST00000266679 ADAMTSL3P82987 1691 aa17.96■□□□□ 0.47
CPSF6-201ENST00000266679 ARHGAP5Q13017 1502 aa17.96■□□□□ 0.47
CPSF6-201ENST00000266679 YEATS2Q9ULM3 1422 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms