RNA–Protein interactions for RNA: ENST00000262043.7

PHF3-201, Transcript of PHD finger protein 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PHF3, Length 8,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-201ENST00000262043 MORC1Q86VD1 984 aa13.1□□□□□ -0.31
PHF3-201ENST00000262043 FOXD1Q16676 465 aa13.1□□□□□ -0.31
PHF3-201ENST00000262043 CECR2Q9BXF3 1484 aa13.08□□□□□ -0.32
PHF3-201ENST00000262043 STK26Q9P289 416 aa13.08□□□□□ -0.32
PHF3-201ENST00000262043 GOLGA6L4A6NEF3 574 aa13.07□□□□□ -0.32
PHF3-201ENST00000262043 HSPA5P11021 654 aaKnown RBP13.06□□□□□ -0.32
PHF3-201ENST00000262043 MCCP23508 829 aa13.06□□□□□ -0.32
PHF3-201ENST00000262043 ROCK2O75116 1388 aaKnown RBP13.06□□□□□ -0.32
PHF3-201ENST00000262043 KTN1Q86UP2 1357 aaKnown RBP13.06□□□□□ -0.32
PHF3-201ENST00000262043 RTF1Q92541 710 aaKnown RBP13.06□□□□□ -0.32
PHF3-201ENST00000262043 HDGFP51858 240 aaKnown RBP13.04□□□□□ -0.32
PHF3-201ENST00000262043 APBB1O00213 710 aa13.04□□□□□ -0.32
PHF3-201ENST00000262043 CCER2I3L3R5 266 aa13.03□□□□□ -0.32
PHF3-201ENST00000262043 DRC7Q8IY82 874 aa13.03□□□□□ -0.32
PHF3-201ENST00000262043 PKD2Q13563 968 aa13.03□□□□□ -0.32
PHF3-201ENST00000262043 VPS8Q8N3P4 1428 aa13.02□□□□□ -0.32
PHF3-201ENST00000262043 GGT6Q6P531 493 aa13.02□□□□□ -0.32
PHF3-201ENST00000262043 CCDC88BA6NC98 1476 aa13.02□□□□□ -0.33
PHF3-201ENST00000262043 NRDCO43847 1150 aa13.02□□□□□ -0.33
PHF3-201ENST00000262043 MSNP26038 577 aaKnown RBP13.02□□□□□ -0.33
PHF3-201ENST00000262043 TRHP20396 242 aaPredicted RBP13.02□□□□□ -0.33
PHF3-201ENST00000262043 CHAF1AQ13111 956 aaPredicted RBP13.01□□□□□ -0.33
PHF3-201ENST00000262043 PAK3O75914 559 aaPredicted RBP13.01□□□□□ -0.33
PHF3-201ENST00000262043 HDGFL2Q7Z4V5 671 aaPredicted RBP13□□□□□ -0.33
PHF3-201ENST00000262043 RBM19Q9Y4C8 960 aaKnown RBP12.99□□□□□ -0.33
PHF3-201ENST00000262043 RAB3GAP2Q9H2M9 1393 aa12.99□□□□□ -0.33
PHF3-201ENST00000262043 SMARCA2P51531 1590 aa12.99□□□□□ -0.33
PHF3-201ENST00000262043 KANK4Q5T7N3 995 aaPredicted RBP12.99□□□□□ -0.33
PHF3-201ENST00000262043 RCAN3Q9UKA8 241 aa12.99□□□□□ -0.33
PHF3-201ENST00000262043 TIMELESSQ9UNS1 1208 aa12.99□□□□□ -0.33
PHF3-201ENST00000262043 MROH2BQ7Z745 1585 aa12.98□□□□□ -0.33
PHF3-201ENST00000262043 GNL2Q13823 731 aaKnown RBP12.98□□□□□ -0.33
PHF3-201ENST00000262043 L1TD1Q5T7N2 865 aaKnown RBP12.98□□□□□ -0.33
PHF3-201ENST00000262043 IPO8O15397 1037 aaKnown RBP12.98□□□□□ -0.33
PHF3-201ENST00000262043 ITPRIPQ8IWB1 547 aa12.98□□□□□ -0.33
PHF3-201ENST00000262043 DEKP35659 375 aaKnown RBP12.98□□□□□ -0.33
PHF3-201ENST00000262043 KIAA1211Q6ZU35 1233 aa12.98□□□□□ -0.33
PHF3-201ENST00000262043 CFAP44Q96MT7 982 aa12.97□□□□□ -0.33
PHF3-201ENST00000262043 U2AF1L5P0DN76 240 aaPredicted RBP12.97□□□□□ -0.33
PHF3-201ENST00000262043 U2AF1Q01081 240 aaKnown RBP eCLIP12.97□□□□□ -0.33
PHF3-201ENST00000262043 MPHOSPH9Q99550 1183 aa12.97□□□□□ -0.33
PHF3-201ENST00000262043 ISY1Q9ULR0 285 aaKnown RBP12.97□□□□□ -0.33
PHF3-201ENST00000262043 CLSTN1O94985 981 aa12.97□□□□□ -0.33
PHF3-201ENST00000262043 CARMIL2Q6F5E8 1435 aa12.96□□□□□ -0.33
PHF3-201ENST00000262043 PRDM2Q13029 1718 aa12.95□□□□□ -0.34
PHF3-201ENST00000262043 NUP155O75694 1391 aa12.95□□□□□ -0.34
PHF3-201ENST00000262043 GZF1Q9H116 711 aaPredicted RBP12.94□□□□□ -0.34
PHF3-201ENST00000262043 RALBP1Q15311 655 aa12.94□□□□□ -0.34
PHF3-201ENST00000262043 FMN1Q68DA7 1419 aa12.94□□□□□ -0.34
PHF3-201ENST00000262043 CALD1Q05682 793 aaKnown RBP12.93□□□□□ -0.34
PHF3-201ENST00000262043 ZNF330Q9Y3S2 320 aaPredicted RBP12.93□□□□□ -0.34
PHF3-201ENST00000262043 EIF3AQ14152 1382 aaKnown RBP12.93□□□□□ -0.34
PHF3-201ENST00000262043 SLKQ9H2G2 1235 aaPredicted RBP12.92□□□□□ -0.34
PHF3-201ENST00000262043 RWDD1Q9H446 243 aaPredicted RBP12.91□□□□□ -0.34
PHF3-201ENST00000262043 GBP4Q96PP9 640 aa12.91□□□□□ -0.34
PHF3-201ENST00000262043 NCBP3Q53F19 620 aaKnown RBP12.91□□□□□ -0.34
PHF3-201ENST00000262043 ANKRD30AQ9BXX3 1397 aa12.91□□□□□ -0.34
PHF3-201ENST00000262043 CCDC146Q8IYE0 955 aa12.9□□□□□ -0.34
PHF3-201ENST00000262043 CSB-PGBD3P0DP91 1061 aa12.89□□□□□ -0.35
PHF3-201ENST00000262043 SMC4Q9NTJ3 1288 aa12.89□□□□□ -0.35
PHF3-201ENST00000262043 SPAG9O60271 1321 aaKnown RBP12.89□□□□□ -0.35
PHF3-201ENST00000262043 TRIM6-TRIM34B2RNG4 842 aa12.89□□□□□ -0.35
PHF3-201ENST00000262043 PMFBP1Q8TBY8 1022 aa12.89□□□□□ -0.35
PHF3-201ENST00000262043 CHMP3Q9Y3E7 222 aa12.89□□□□□ -0.35
PHF3-201ENST00000262043 TOP2AP11388 1531 aaKnown RBP12.88□□□□□ -0.35
PHF3-201ENST00000262043 MFAP1P55081 439 aaKnown RBP12.88□□□□□ -0.35
PHF3-201ENST00000262043 PTMSP20962 102 aa12.88□□□□□ -0.35
PHF3-201ENST00000262043 HNRNPMP52272 730 aaKnown RBP eCLIP12.87□□□□□ -0.354e-7■■■■□ 20.1
PHF3-201ENST00000262043 TCERG1O14776 1098 aaKnown RBP12.87□□□□□ -0.35
PHF3-201ENST00000262043 NUTM2DQ5VT03 806 aaPredicted RBP12.87□□□□□ -0.35
PHF3-201ENST00000262043 GPATCH3Q96I76 525 aa12.86□□□□□ -0.35
PHF3-201ENST00000262043 PDS5BQ9NTI5 1447 aa12.86□□□□□ -0.35
PHF3-201ENST00000262043 CCDC18Q5T9S5 1454 aa12.85□□□□□ -0.35
PHF3-201ENST00000262043 SLC4A10Q6U841 1118 aa12.85□□□□□ -0.35
PHF3-201ENST00000262043 STK31Q9BXU1 1019 aa12.85□□□□□ -0.35
PHF3-201ENST00000262043 TDRD9Q8NDG6 1382 aaKnown RBP12.84□□□□□ -0.35
PHF3-201ENST00000262043 GORABQ5T7V8 394 aa12.84□□□□□ -0.35
PHF3-201ENST00000262043 KIAA2012Q0VF49 1180 aa12.84□□□□□ -0.35
PHF3-201ENST00000262043 HSP90B1P14625 803 aaKnown RBP12.84□□□□□ -0.35
PHF3-201ENST00000262043 KIF3BO15066 747 aa12.84□□□□□ -0.35
PHF3-201ENST00000262043 ARID3AQ99856 593 aa12.84□□□□□ -0.35
PHF3-201ENST00000262043 SYAP1Q96A49 352 aaPredicted RBP12.83□□□□□ -0.36
PHF3-201ENST00000262043 FHOD3Q2V2M9 1422 aa12.83□□□□□ -0.36
PHF3-201ENST00000262043 TAF7LQ5H9L4 462 aa12.83□□□□□ -0.36
PHF3-201ENST00000262043 EFCAB2Q5VUJ9 269 aa12.83□□□□□ -0.36
PHF3-201ENST00000262043 CLUAP1Q96AJ1 413 aa12.83□□□□□ -0.36
PHF3-201ENST00000262043 TERF2IPQ9NYB0 399 aa12.83□□□□□ -0.36
PHF3-201ENST00000262043 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.83□□□□□ -0.361e-6■■□□□ 11.8
PHF3-201ENST00000262043 AMER1Q5JTC6 1135 aaPredicted RBP12.82□□□□□ -0.36
PHF3-201ENST00000262043 L3MBTL2Q969R5 705 aa12.82□□□□□ -0.36
PHF3-201ENST00000262043 FOXD4L1Q9NU39 408 aa12.82□□□□□ -0.36
PHF3-201ENST00000262043 HTATSF1O43719 755 aaKnown RBP12.81□□□□□ -0.36
PHF3-201ENST00000262043 NOL8Q76FK4 1167 aaKnown RBP12.81□□□□□ -0.36
PHF3-201ENST00000262043 CENPJQ9HC77 1338 aaPredicted RBP12.81□□□□□ -0.36
PHF3-201ENST00000262043 RAPGEF2Q9Y4G8 1499 aa12.8□□□□□ -0.36
PHF3-201ENST00000262043 HMMRO75330 724 aa12.79□□□□□ -0.36
PHF3-201ENST00000262043 WASHC2CQ9Y4E1 1318 aa12.79□□□□□ -0.36
PHF3-201ENST00000262043 IPO9Q96P70 1041 aaKnown RBP12.79□□□□□ -0.36
PHF3-201ENST00000262043 KIF15Q9NS87 1388 aa12.79□□□□□ -0.36
PHF3-201ENST00000262043 NUTM2FA1L443 756 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms