RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 DAPK1P53355 1430 aa26.89■■□□□ 1.9
VIM-201ENST00000224237 AKNAQ7Z591 1439 aa26.89■■□□□ 1.9
VIM-201ENST00000224237 RIMBP3CA6NJZ7 1639 aa26.89■■□□□ 1.9
VIM-201ENST00000224237 RIMBP3BA6NNM3 1639 aa26.89■■□□□ 1.9
VIM-201ENST00000224237 RIMBP3Q9UFD9 1639 aa26.89■■□□□ 1.9
VIM-201ENST00000224237 ZNF777Q9ULD5 760 aaPredicted RBP26.88■■□□□ 1.89
VIM-201ENST00000224237 PREX2Q70Z35 1606 aa26.88■■□□□ 1.89
VIM-201ENST00000224237 NAIPQ13075 1403 aa26.86■■□□□ 1.89
VIM-201ENST00000224237 WDR7Q9Y4E6 1490 aa26.84■■□□□ 1.89
VIM-201ENST00000224237 CDC42BPBQ9Y5S2 1711 aa26.84■■□□□ 1.89
VIM-201ENST00000224237 ABCC5O15440 1437 aa26.84■■□□□ 1.89
VIM-201ENST00000224237 GCC2Q8IWJ2 1684 aa26.84■■□□□ 1.89
VIM-201ENST00000224237 CHIC2Q9UKJ5 165 aa26.83■■□□□ 1.88
VIM-201ENST00000224237 MYO5CQ9NQX4 1742 aa26.81■■□□□ 1.88
VIM-201ENST00000224237 ASXL2Q76L83 1435 aa26.81■■□□□ 1.88
VIM-201ENST00000224237 ROCK1Q13464 1354 aa26.8■■□□□ 1.88
VIM-201ENST00000224237 CROCC2H7BZ55 1655 aa26.79■■□□□ 1.88
VIM-201ENST00000224237 CYB5RLQ6IPT4 315 aa26.79■■□□□ 1.88
VIM-201ENST00000224237 SAMD9LQ8IVG5 1584 aa26.76■■□□□ 1.88
VIM-201ENST00000224237 ARHGAP5Q13017 1502 aa26.76■■□□□ 1.87
VIM-201ENST00000224237 NPM1P06748 294 aaKnown RBP eCLIP26.76■■□□□ 1.87
VIM-201ENST00000224237 RRP7BPQ9NSQ0 103 aa26.74■■□□□ 1.87
VIM-201ENST00000224237 ADGBQ8N7X0 1667 aa26.74■■□□□ 1.87
VIM-201ENST00000224237 ARHGEF5Q12774 1597 aa26.73■■□□□ 1.87
VIM-201ENST00000224237 SHANK2Q9UPX8 1470 aa26.72■■□□□ 1.87
VIM-201ENST00000224237 ADGRL2O95490 1459 aa26.7■■□□□ 1.87
VIM-201ENST00000224237 MAPKBP1O60336 1514 aa26.7■■□□□ 1.86
VIM-201ENST00000224237 PLCH2O75038 1416 aa26.7■■□□□ 1.86
VIM-201ENST00000224237 ABCA9Q8IUA7 1624 aa26.67■■□□□ 1.86
VIM-201ENST00000224237 HNRNPMP52272 730 aaKnown RBP eCLIP26.67■■□□□ 1.86
VIM-201ENST00000224237 MBD5Q9P267 1494 aa26.67■■□□□ 1.86
VIM-201ENST00000224237 ARAP3Q8WWN8 1544 aa26.66■■□□□ 1.86
VIM-201ENST00000224237 PLEKHH2Q8IVE3 1493 aa26.66■■□□□ 1.86
VIM-201ENST00000224237 SYCP2Q9BX26 1530 aa26.65■■□□□ 1.86
VIM-201ENST00000224237 KDM6BO15054 1643 aa26.65■■□□□ 1.86
VIM-201ENST00000224237 NCOA1Q15788 1441 aa26.65■■□□□ 1.86
VIM-201ENST00000224237 ACIN1Q9UKV3 1341 aaKnown RBP26.64■■□□□ 1.86
VIM-201ENST00000224237 RSPH4AQ5TD94 716 aa26.64■■□□□ 1.86
VIM-201ENST00000224237 CCDC141Q6ZP82 1450 aa26.64■■□□□ 1.85
VIM-201ENST00000224237 C9orf84Q5VXU9 1444 aa26.62■■□□□ 1.85
VIM-201ENST00000224237 KIAA1107Q9UPP5 1409 aa26.62■■□□□ 1.85
VIM-201ENST00000224237 ANKRD30AQ9BXX3 1397 aa26.62■■□□□ 1.85
VIM-201ENST00000224237 TSPY4P0CV99 314 aa26.6■■□□□ 1.85
VIM-201ENST00000224237 TSPY10P0CW01 314 aa26.6■■□□□ 1.85
VIM-201ENST00000224237 EFCAB2Q5VUJ9 269 aa26.59■■□□□ 1.85
VIM-201ENST00000224237 ARHGEF12Q9NZN5 1544 aa26.58■■□□□ 1.85
VIM-201ENST00000224237 ABCC1P33527 1531 aa26.56■■□□□ 1.84
VIM-201ENST00000224237 MAST1Q9Y2H9 1570 aa26.54■■□□□ 1.84
VIM-201ENST00000224237 FANCAO15360 1455 aa26.53■■□□□ 1.84
VIM-201ENST00000224237 TRIM52Q96A61 297 aa26.49■■□□□ 1.83
VIM-201ENST00000224237 ANKRD50Q9ULJ7 1429 aa26.48■■□□□ 1.83
VIM-201ENST00000224237 TRAPPC8Q9Y2L5 1435 aa26.48■■□□□ 1.83
VIM-201ENST00000224237 CD109Q6YHK3 1445 aa26.47■■□□□ 1.83
VIM-201ENST00000224237 KIF15Q9NS87 1388 aa26.46■■□□□ 1.83
VIM-201ENST00000224237 PLXNC1O60486 1568 aa26.44■■□□□ 1.82
VIM-201ENST00000224237 ADGRL1O94910 1474 aa26.42■■□□□ 1.82
VIM-201ENST00000224237 DENND4BO75064 1496 aaPredicted RBP26.41■■□□□ 1.82
VIM-201ENST00000224237 MPHOSPH9Q99550 1183 aa26.4■■□□□ 1.82
VIM-201ENST00000224237 CFAP74Q9C0B2 1584 aa26.4■■□□□ 1.82
VIM-201ENST00000224237 AFAP1Q8N556 730 aa26.38■■□□□ 1.81
VIM-201ENST00000224237 SCAPERQ9BY12 1400 aa26.38■■□□□ 1.81
VIM-201ENST00000224237 SIN3AQ96ST3 1273 aa26.38■■□□□ 1.81
VIM-201ENST00000224237 TIMELESSQ9UNS1 1208 aa26.38■■□□□ 1.81
VIM-201ENST00000224237 DIP2BQ9P265 1576 aa26.36■■□□□ 1.81
VIM-201ENST00000224237 MAP3K4Q9Y6R4 1608 aa26.36■■□□□ 1.81
VIM-201ENST00000224237 GLI2P10070 1586 aa26.35■■□□□ 1.81
VIM-201ENST00000224237 PZPP20742 1482 aa26.34■■□□□ 1.81
VIM-201ENST00000224237 RTEL1-TNFRSF6BF6WH68 1400 aa26.34■■□□□ 1.81
VIM-201ENST00000224237 NEUROD1Q13562 356 aa26.34■■□□□ 1.81
VIM-201ENST00000224237 ZFYVE16Q7Z3T8 1539 aa26.32■■□□□ 1.8
VIM-201ENST00000224237 KDM5DQ9BY66 1539 aa26.32■■□□□ 1.8
VIM-201ENST00000224237 DUOX2Q9NRD8 1548 aa26.32■■□□□ 1.8
VIM-201ENST00000224237 SLC4A1APQ9BWU0 796 aaKnown RBP26.32■■□□□ 1.8
VIM-201ENST00000224237 SPAG9O60271 1321 aaKnown RBP26.31■■□□□ 1.8
VIM-201ENST00000224237 FAM69CQ0P6D2 419 aa26.3■■□□□ 1.8
VIM-201ENST00000224237 ERBINQ96RT1 1412 aa26.28■■□□□ 1.8
VIM-201ENST00000224237 INO80Q9ULG1 1556 aaPredicted RBP26.27■■□□□ 1.8
VIM-201ENST00000224237 NUP155O75694 1391 aa26.26■■□□□ 1.79
VIM-201ENST00000224237 FOXD1Q16676 465 aa26.25■■□□□ 1.79
VIM-201ENST00000224237 ATP7AQ04656 1500 aa26.25■■□□□ 1.79
VIM-201ENST00000224237 NEO1Q92859 1461 aa26.25■■□□□ 1.79
VIM-201ENST00000224237 UNC13BO14795 1591 aa26.25■■□□□ 1.79
VIM-201ENST00000224237 ZNF518AQ6AHZ1 1483 aa26.25■■□□□ 1.79
VIM-201ENST00000224237 TONSLQ96HA7 1378 aa26.24■■□□□ 1.79
VIM-201ENST00000224237 ANKRD30BQ9BXX2 1392 aa26.23■■□□□ 1.79
VIM-201ENST00000224237 POGZQ7Z3K3 1410 aa26.23■■□□□ 1.79
VIM-201ENST00000224237 TSPOAP1O95153 1857 aa26.22■■□□□ 1.79
VIM-201ENST00000224237 ZNF316A6NFI3 1004 aaPredicted RBP26.19■■□□□ 1.78
VIM-201ENST00000224237 MYT1LQ9UL68 1186 aa26.19■■□□□ 1.78
VIM-201ENST00000224237 PPRC1Q5VV67 1664 aaKnown RBP26.19■■□□□ 1.78
VIM-201ENST00000224237 KIDINS220Q9ULH0 1771 aa26.19■■□□□ 1.78
VIM-201ENST00000224237 KIF13AQ9H1H9 1805 aa26.19■■□□□ 1.78
VIM-201ENST00000224237 KDM5CP41229 1560 aa26.18■■□□□ 1.78
VIM-201ENST00000224237 FAM135AQ9P2D6 1515 aa26.17■■□□□ 1.78
VIM-201ENST00000224237 MAGI2Q86UL8 1455 aa26.17■■□□□ 1.78
VIM-201ENST00000224237 PKD2Q13563 968 aa26.15■■□□□ 1.78
VIM-201ENST00000224237 RPRD2Q5VT52 1461 aaKnown RBP26.15■■□□□ 1.78
VIM-201ENST00000224237 RAPGEF3O95398 923 aa26.15■■□□□ 1.78
VIM-201ENST00000224237 IQGAP3Q86VI3 1631 aa26.14■■□□□ 1.77
VIM-201ENST00000224237 PPP1R15AO75807 674 aaPredicted RBP26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms