RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	YFL054C	P43549	646 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	ARC1	P46672	376 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	LSM1	P47017	172 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	HNT2	P49775	206 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	DIE2	P50076	525 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	NAS6	P50086	228 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	ORC5	P50874	479 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	PIP2	P52960	996 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	COS1	P53822	381 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	SNZ2	P53824	298 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	LOT6	Q07923	191 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	BRX1	Q08235	291 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	FEX2	Q08991	375 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	PSY3	Q12318	242 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	TPK3	P05986	398 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	CMP2	P14747	604 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	RVS161	P25343	265 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	PRR1	P28708	518 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	PMT2	P31382	759 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	ASF2	P32448	525 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	PPQ1	P32945	549 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	SRB2	P34162	210 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	TOM20	P35180	183 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YKL151C	P36059	337 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	CST26	P38226	397 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	PMC1	P38929	1173 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	YAR028W	P39548	234 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	GEM1	P39722	662 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	ICP55	P40051	511 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	EMP65	P40085	556 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	CCT7	P42943	550 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	DBP6	P53734	629 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	BSC5	P53755	489 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	FOL1	P53848	824 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YDR249C	Q03787	373 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	SEG1	Q04279	960 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	PRM6	Q04705	352 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YPL191C	Q08930	360 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	THP3	Q12049	470 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	YDR018C	Q12185	396 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	RPS17A	P02407	136 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	RPS17B	P14127	136 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	CHA1	P25379	360 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	CDC20	P26309	610 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	SEC1	P30619	724 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	SAC1	P32368	623 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	MRS6	P32864	603 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	RIM2	P38127	377 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YBR284W	P38150	797 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	ECM13	P38195	257 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	IMD2	P38697	523 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	KEL1	P38853	1164 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	NMD3	P38861	518 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	YJR061W	P40355	935 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	HXT9	P40885	567 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	BST1	P43571	1029 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	ALY2	P47029	1046 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	JJJ3	P47138	172 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	HSV2	P50079	448 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	RAI1	P53063	387 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	NSG2	P53898	299 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	MRPL13	Q02204	264 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YMR099C	Q03161	297 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	PFA5	Q03289	374 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	TVP15	Q03860	143 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	ARX1	Q03862	593 aa	Known RBP	4.94	□□□□□ -1.62
CDC4	YFL009W	DLT1	Q04216	342 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YNG1	Q08465	219 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YOL107W	Q12239	342 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	DPH6	Q12429	685 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	YBR298C-A	Q8TGK4	73 aa		4.94	□□□□□ -1.62
CDC4	YFL009W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CDC4	YFL009W	PUT2	P07275	575 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	RPL11A	P0C0W9	174 aa	Known RBP	4.93	□□□□□ -1.62
CDC4	YFL009W	DSF1	P0CX08	502 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	YNR073C	P0CX09	502 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	RAD18	P10862	487 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	SRM1	P21827	482 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	DAL2	P25335	343 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	CTR86	P25355	563 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	YBR241C	P38142	488 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	TDP1	P38319	544 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	PCA1	P38360	1216 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CDC4	YFL009W	YHR045W	P38775	560 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	YHR218W	P38899	603 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	YFL066C	P43538	392 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	HOC1	P47124	396 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	SAP4	P53036	818 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	SOL4	P53315	255 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	CAF40	P53829	373 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	TIM8	P57744	87 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	PET117	Q02771	107 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	IRC4	Q03036	179 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	DBP9	Q06218	594 aa	Known RBP	4.93	□□□□□ -1.62
CDC4	YFL009W	REH1	Q06709	432 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	SMF3	Q12078	473 aa	Predicted RBP	4.93	□□□□□ -1.62
CDC4	YFL009W	YPR1	Q12458	312 aa		4.93	□□□□□ -1.62
CDC4	YFL009W	RPL11B	Q3E757	174 aa	Predicted RBP	4.93	□□□□□ -1.62
CDC4	YFL009W	STE12	P13574	688 aa		4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 38.5 ms