RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	BAT1	P38891	393 aa	Known RBP	10.52	□□□□□ -0.73
VPS60	YDR486C	SPF1	P39986	1215 aa	Known RBP	10.52	□□□□□ -0.73
VPS60	YDR486C	YER034W	P40022	185 aa	Known RBP	10.52	□□□□□ -0.73
VPS60	YDR486C	YJL070C	P40361	888 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	MET18	P40469	1032 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	COS4	P43542	379 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	NNF2	P53253	936 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	AAT1	Q01802	451 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	YDL121C	Q07541	149 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	OSW1	Q08692	278 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	ATG34	Q12292	412 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	YOL087C	Q99247	1116 aa		10.52	□□□□□ -0.73
VPS60	YDR486C	RNA1	P11745	407 aa	Known RBP	10.51	□□□□□ -0.73
VPS60	YDR486C	CRM1	P30822	1084 aa	Known RBP	10.51	□□□□□ -0.73
VPS60	YDR486C	CUE2	P36075	443 aa	Known RBP	10.51	□□□□□ -0.73
VPS60	YDR486C	TSC10	P38342	320 aa		10.51	□□□□□ -0.73
VPS60	YDR486C	ARN1	P38731	627 aa		10.51	□□□□□ -0.73
VPS60	YDR486C	GCD10	P41814	478 aa		10.51	□□□□□ -0.73
VPS60	YDR486C	YPT32	P51996	222 aa	Known RBP	10.51	□□□□□ -0.73
VPS60	YDR486C	YGR015C	P53208	328 aa		10.51	□□□□□ -0.73
VPS60	YDR486C	GTB1	Q04924	702 aa		10.51	□□□□□ -0.73
VPS60	YDR486C	RAD34	Q06665	692 aa		10.51	□□□□□ -0.73
VPS60	YDR486C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	10.51	□□□□□ -0.73	not detected
VPS60	YDR486C	DBR1	P24309	405 aa	Known RBP	10.5	□□□□□ -0.73
VPS60	YDR486C	COX13	P32799	129 aa		10.5	□□□□□ -0.73
VPS60	YDR486C	SRX1	P36077	127 aa		10.5	□□□□□ -0.73
VPS60	YDR486C	RRP3	P38712	501 aa	Known RBP	10.5	□□□□□ -0.73
VPS60	YDR486C	WSC4	P38739	605 aa		10.5	□□□□□ -0.73
VPS60	YDR486C	GIM4	P40005	111 aa	Known RBP	10.5	□□□□□ -0.73
VPS60	YDR486C	YEN1	P40028	759 aa		10.5	□□□□□ -0.73
VPS60	YDR486C	SEC27	P41811	889 aa	Known RBP	10.5	□□□□□ -0.73
VPS60	YDR486C	PFA3	P42836	336 aa		10.5	□□□□□ -0.73
VPS60	YDR486C	MPS2	P53159	387 aa		10.5	□□□□□ -0.73
VPS60	YDR486C	PLB3	Q08108	686 aa		10.5	□□□□□ -0.73
VPS60	YDR486C	STE3	P06783	470 aa		10.49	□□□□□ -0.73
VPS60	YDR486C	DGR2	P32330	852 aa		10.49	□□□□□ -0.73
VPS60	YDR486C	SSE1	P32589	693 aa	Known RBP	10.49	□□□□□ -0.73
VPS60	YDR486C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	10.49	□□□□□ -0.73	not detected
VPS60	YDR486C	YBL029W	P38201	376 aa		10.49	□□□□□ -0.73
VPS60	YDR486C	YHR127W	P38833	243 aa	Known RBP	10.49	□□□□□ -0.73
VPS60	YDR486C	PFS1	P38872	237 aa		10.49	□□□□□ -0.73
VPS60	YDR486C	ARB1	P40024	610 aa	Known RBP	10.49	□□□□□ -0.73
VPS60	YDR486C	TIF34	P40217	347 aa	Known RBP	10.49	□□□□□ -0.73
VPS60	YDR486C	YMR111C	Q04461	462 aa	Predicted RBP	10.49	□□□□□ -0.73
VPS60	YDR486C	YPR202W	Q08993	238 aa		10.49	□□□□□ -0.73
VPS60	YDR486C	RRP42	Q12277	265 aa	Predicted RBP	10.49	□□□□□ -0.73
VPS60	YDR486C	CMR1	Q12510	522 aa	Known RBP	10.49	□□□□□ -0.73
VPS60	YDR486C	MSB2	P32334	1306 aa		10.49	□□□□□ -0.73
VPS60	YDR486C	DEF1	P35732	738 aa	Known RBP	10.48	□□□□□ -0.73
VPS60	YDR486C	RMA1	P36001	430 aa	Known RBP	10.48	□□□□□ -0.73
VPS60	YDR486C	CCT7	P42943	550 aa	Known RBP	10.48	□□□□□ -0.73
VPS60	YDR486C	YGL176C	P46945	554 aa		10.48	□□□□□ -0.73
VPS60	YDR486C	TY4A-J	P47023	414 aa		10.48	□□□□□ -0.73
VPS60	YDR486C	YJR149W	P47177	404 aa		10.48	□□□□□ -0.73
VPS60	YDR486C	GCV1	P48015	400 aa		10.48	□□□□□ -0.73
VPS60	YDR486C	YGR053C	P53234	283 aa		10.48	□□□□□ -0.73
VPS60	YDR486C	YDR056C	Q12025	205 aa		10.48	□□□□□ -0.73
VPS60	YDR486C	SRO7	Q12038	1033 aa		10.48	□□□□□ -0.73
VPS60	YDR486C	HSH49	Q99181	213 aa	Predicted RBP	10.48	□□□□□ -0.73
VPS60	YDR486C	PWP1	P21304	576 aa	Known RBP	10.47	□□□□□ -0.73
VPS60	YDR486C	FZO1	P38297	855 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	INM1	P38710	295 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	GIC1	P38785	314 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	YJR030C	P47101	745 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	MNN10	P50108	393 aa	Known RBP	10.47	□□□□□ -0.73
VPS60	YDR486C	MIG2	P53035	382 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	MDM34	P53083	459 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	YNL260C	P53846	198 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	ROT1	Q03691	256 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	VHS1	Q03785	461 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	YML053C	Q04978	212 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	CDA1	Q06702	301 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	SLF1	Q12034	447 aa	Known RBP	10.47	□□□□□ -0.73
VPS60	YDR486C	SRN2	Q99176	213 aa		10.47	□□□□□ -0.73
VPS60	YDR486C	HXK2	P04807	486 aa	Known RBP	10.46	□□□□□ -0.73
VPS60	YDR486C	ARD1	P07347	238 aa	Predicted RBP	10.46	□□□□□ -0.73
VPS60	YDR486C	OCA4	P25366	362 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	MGM101	P32787	269 aa	Known RBP	10.46	□□□□□ -0.73
VPS60	YDR486C	DED81	P38707	554 aa	Known RBP	10.46	□□□□□ -0.73
VPS60	YDR486C	TRM5	P38793	499 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	YPT35	P38815	214 aa	Known RBP	10.46	□□□□□ -0.73
VPS60	YDR486C	YFR020W	P43600	232 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	NAS6	P50086	228 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	CAF120	P53836	1060 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	YMR034C	Q05131	434 aa	Predicted RBP	10.46	□□□□□ -0.73
VPS60	YDR486C	RTT10	Q08924	1013 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	HUA2	Q12134	243 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	YPL245W	Q12179	454 aa	Known RBP	10.46	□□□□□ -0.73
VPS60	YDR486C	YPR011C	Q12251	326 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	SAS5	Q99314	248 aa		10.46	□□□□□ -0.73
VPS60	YDR486C	COX3	P00420	269 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	STE14	P32584	239 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	CAF4	P36130	643 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	BMT2	P38278	337 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	PCF11	P39081	626 aa	Predicted RBP	10.45	□□□□□ -0.74
VPS60	YDR486C	RLP7	P40693	322 aa	Known RBP	10.45	□□□□□ -0.74
VPS60	YDR486C	PTR3	P43606	678 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	IMA1	P53051	589 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	COS12	P53053	380 aa		10.45	□□□□□ -0.74
VPS60	YDR486C	COG2	P53271	262 aa		10.45	□□□□□ -0.74

Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms