RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	SSU1	P41930	458 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	PYK2	P52489	506 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	PDS5	Q04264	1277 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	TAP42	Q04372	366 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	SWF1	Q04629	336 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	ISA2	Q12425	185 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	RRI1	Q12468	440 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	YDL007C-A	Q2V2Q0	85 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	SNF3	P10870	884 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	RPL3	P14126	387 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	CNA1	P23287	553 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	YCR051W	P25631	222 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	URA7	P28274	579 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	PEX5	P35056	612 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	BLI1	P35727	113 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	UBA4	P38820	440 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	CIN4	P39110	191 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	AIM22	P47051	409 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	PKP2	P53170	491 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	DRN1	P53255	507 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	IDP3	P53982	420 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	SXM1	Q04175	944 aa	Known RBP	2.29	□□□□□ -2.04
NCL1	YBL024W	AIM32	Q04689	311 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	ROY1	Q04847	553 aa		2.29	□□□□□ -2.04
NCL1	YBL024W	YML133C	Q03099	1374 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	YLL067C	Q07888	1374 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	YLL066C	Q99208	1374 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	PEP4	P07267	405 aa	Known RBP	2.28	□□□□□ -2.04
NCL1	YBL024W	CLB1	P24868	471 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	SNT1	P25357	1226 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	GAC1	P28006	793 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	LEU5	P38702	357 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	DLD2	P46681	530 aa	Known RBP	2.28	□□□□□ -2.04
NCL1	YBL024W	UBP8	P50102	471 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	CAF130	P53280	1122 aa	Predicted RBP	2.28	□□□□□ -2.04
NCL1	YBL024W	TOF2	Q02208	771 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	YMR160W	Q03823	816 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	YDL057W	Q07379	328 aa		2.28	□□□□□ -2.04
NCL1	YBL024W	SGV1	P23293	657 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	PPH22	P23595	377 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	ERV1	P27882	189 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	PAP1	P29468	568 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	KEL1	P38853	1164 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	SPC97	P38863	823 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	VMA13	P41807	478 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	ZIM17	P42844	174 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	YGR126W	P53274	230 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	COP1	P53622	1201 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	CAC2	Q04199	468 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	YDL218W	Q07629	317 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	FMP45	Q07651	309 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	YLR112W	Q12130	139 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	AFI1	Q99222	893 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	EDE1	P34216	1381 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	CBP1	P07252	654 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	RPL31B	P0C2H9	113 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	PRP2	P20095	876 aa	Predicted RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	CDC60	P26637	1090 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	RML2	P32611	393 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	TCB2	P48231	1178 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	ART5	P53244	586 aa	Known RBP	2.27	□□□□□ -2.05
NCL1	YBL024W	ARP10	Q04549	284 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	SOV1	Q04748	898 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	VTA1	Q06263	330 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	CDC45	Q08032	650 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	CRC1	Q12289	327 aa		2.27	□□□□□ -2.05
NCL1	YBL024W	COR1	P07256	457 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	YAP1	P19880	650 aa	Known RBP	2.26	□□□□□ -2.05
NCL1	YBL024W	REC107	P21651	314 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	SWI3	P32591	825 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	TUL1	P36096	758 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	STV1	P37296	890 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	ROT2	P38138	954 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	THI2	P38141	450 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	FLO5	P38894	1075 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	PHO90	P39535	881 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	YIL024C	P40543	189 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	SNG1	P46950	547 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	ATG27	P46989	271 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	YPT11	P48559	417 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	SCS3	P53012	380 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	BUD32	P53323	261 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	DUG3	P53871	357 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	SLG1	P54867	378 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	ERO1	Q03103	563 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	YOR365C	Q08844	703 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	HSP82	P02829	709 aa	Known RBP	2.26	□□□□□ -2.05
NCL1	YBL024W	RPB8	P20436	146 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	RPS2	P25443	254 aa	Known RBP	2.26	□□□□□ -2.05
NCL1	YBL024W	IDH2	P28241	369 aa	Known RBP	2.26	□□□□□ -2.05
NCL1	YBL024W	YIM1	P28625	365 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	SHP1	P34223	423 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	YHR210C	P38893	341 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	MBB1	P39534	108 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	VRG4	P40107	337 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	YMR147W	P40218	223 aa	Known RBP	2.26	□□□□□ -2.05
NCL1	YBL024W	PCI8	P40512	444 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	CFD1	P40558	293 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	VPS25	P47142	202 aa		2.26	□□□□□ -2.05
NCL1	YBL024W	YGL108C	P53139	140 aa		2.26	□□□□□ -2.05

Retrieved 100 of 5,963 RNA–protein pairs in 32.1 ms