RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 EYA1Q99502 592 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 GOLGA8QA0A0J9YX86 632 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 GOLGA8OA6NCC3 632 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 GOLGA8NF8WBI6 632 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 KRT10P13645 584 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 ZNF18P17022 549 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 STAT1P42224 750 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 C8orf34Q49A92 452 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 CAPN12Q6ZSI9 719 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 IFNB1P01574 187 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 FAM89AQ96GI7 184 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 AMFRQ9UKV5 643 aa13.15□□□□□ -0.3
PCF11-201ENST00000298281 TTBK2Q6IQ55 1244 aa13.15□□□□□ -0.31
PCF11-201ENST00000298281 ARMT1Q9H993 441 aa13.15□□□□□ -0.31
PCF11-201ENST00000298281 CSADQ9Y600 493 aa13.15□□□□□ -0.31
PCF11-201ENST00000298281 RINT1Q6NUQ1 792 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 ATP8A2Q9NTI2 1148 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 NFE2L3Q9Y4A8 694 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 PSDA5PKW4 1024 aaPredicted RBP13.14□□□□□ -0.31
PCF11-201ENST00000298281 LARGE2Q8N3Y3 721 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 TEX9Q8N6V9 391 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 ZNF513Q8N8E2 541 aaPredicted RBP13.14□□□□□ -0.31
PCF11-201ENST00000298281 APOL6Q9BWW8 343 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 TIMM10P62072 90 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 SLMAPQ14BN4 828 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 ELMSAN1Q6PJG2 1045 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 BBS5Q8N3I7 341 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 EPAS1Q99814 870 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 AS3MTQ9HBK9 375 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 SUPT3HB4E1H0 165 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 ATF7P17544 494 aaPredicted RBP13.14□□□□□ -0.31
PCF11-201ENST00000298281 CAPRIN1Q14444 709 aaKnown RBP13.14□□□□□ -0.31
PCF11-201ENST00000298281 TRIM58Q8NG06 486 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 CSRNP1Q96S65 589 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 HINFPQ9BQA5 517 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 ATG3Q9NT62 314 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 DDX41Q9UJV9 622 aaKnown RBP13.14□□□□□ -0.31
PCF11-201ENST00000298281 CLCA2Q9UQC9 943 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 PRAG1Q86YV5 1406 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 TRIM37O94972 964 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 SOX5P35711 763 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 TTC25Q96NG3 672 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 HOXC9P31274 260 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 TSC22D1Q15714 1073 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 RSRC2Q7L4I2 434 aaKnown RBP13.14□□□□□ -0.31
PCF11-201ENST00000298281 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.14□□□□□ -0.31
PCF11-201ENST00000298281 IFT122Q9HBG6 1241 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 HOMER3Q9NSC5 361 aa13.14□□□□□ -0.31
PCF11-201ENST00000298281 ARPP21Q9UBL0 812 aaPredicted RBP13.14□□□□□ -0.31
PCF11-201ENST00000298281 XRCC5P13010 732 aaKnown RBP13.13□□□□□ -0.31
PCF11-201ENST00000298281 HADHQ16836 314 aaKnown RBP13.13□□□□□ -0.31
PCF11-201ENST00000298281 CABP7Q86V35 215 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 PPP1R14AQ96A00 147 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 TYW1Q9NV66 732 aaKnown RBP13.13□□□□□ -0.31
PCF11-201ENST00000298281 F8W8V4 182 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 PTPREP23469 700 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 LMNB2Q03252 620 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 SNX1Q13596 522 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 Q3C1V9 767 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ARHGEF16Q5VV41 709 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 IFIH1Q9BYX4 1025 aaKnown RBP13.13□□□□□ -0.31
PCF11-201ENST00000298281 ANKRD20A4Q4UJ75 823 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ANKRD20A8PQ5CZ79 823 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ANKRD20A2Q5SQ80 823 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ANKRD20A1Q5TYW2 823 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 GALNT17Q6IS24 598 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ZBTB8OSQ8IWT0 167 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 NELFBQ8WX92 580 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ZBED2Q9BTP6 218 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 GPATCH8Q9UKJ3 1502 aaKnown RBP13.13□□□□□ -0.31
PCF11-201ENST00000298281 ZNF75DP51815 510 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 PSMB7Q99436 277 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ADPGKQ9BRR6 497 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 MLXIPQ9HAP2 919 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 SLC12A6Q9UHW9 1150 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 TPCN1Q9ULQ1 816 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 SGSM2O43147 1006 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 GAS7O60861 476 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 HIP1RO75146 1068 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 ESRRGP62508 458 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 MAPK8IP1Q9UQF2 711 aa13.13□□□□□ -0.31
PCF11-201ENST00000298281 PABPC4Q13310 644 aaKnown RBP eCLIP13.12□□□□□ -0.31
PCF11-201ENST00000298281 PHLDB3Q6NSJ2 640 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 DEPTORQ8TB45 409 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 BAIAP2L1Q9UHR4 511 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 GPC4O75487 556 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 FBLN1P23142 703 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 STX2P32856 288 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 ARPP19P56211 112 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 NLRP9Q7RTR0 991 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 DSCC1Q9BVC3 393 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 THEGQ9P2T0 379 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 A6NJR5 290 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 TJAP1Q5JTD0 557 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 RDH13Q8NBN7 331 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 TM6SF1Q9BZW5 370 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 AATFQ9NY61 560 aaKnown RBP eCLIP13.12□□□□□ -0.31
PCF11-201ENST00000298281 E9PMD0 336 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 ARHGAP44Q17R89 818 aa13.12□□□□□ -0.31
PCF11-201ENST00000298281 HABP4Q5JVS0 413 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 298 ms