RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	RRP3	P38712	501 aa	Known RBP	15.26	■□□□□ 0.03
CCC1	YLR220W	SHY1	P53266	389 aa		15.26	■□□□□ 0.03
CCC1	YLR220W	IBD2	P53892	351 aa		15.26	■□□□□ 0.03
CCC1	YLR220W	MFB1	Q04922	465 aa		15.26	■□□□□ 0.03
CCC1	YLR220W	AHA1	Q12449	350 aa	Known RBP	15.26	■□□□□ 0.03
CCC1	YLR220W	YPT6	Q99260	215 aa		15.26	■□□□□ 0.03
CCC1	YLR220W	NUP120	P35729	1037 aa		15.25	■□□□□ 0.03
CCC1	YLR220W	NPT1	P39683	429 aa	Known RBP	15.25	■□□□□ 0.03
CCC1	YLR220W	PRM2	P40534	656 aa		15.25	■□□□□ 0.03
CCC1	YLR220W	EFM5	P53200	248 aa	Known RBP	15.25	■□□□□ 0.03
CCC1	YLR220W	LSM3	P57743	89 aa	Known RBP	15.25	■□□□□ 0.03
CCC1	YLR220W	MRS2	Q01926	470 aa		15.25	■□□□□ 0.03
CCC1	YLR220W	NOB1	Q08444	459 aa	Known RBP	15.25	■□□□□ 0.03
CCC1	YLR220W	RTT10	Q08924	1013 aa		15.25	■□□□□ 0.03
CCC1	YLR220W	MRE11	P32829	692 aa		15.24	■□□□□ 0.03
CCC1	YLR220W	SEC31	P38968	1273 aa	Known RBP	15.24	■□□□□ 0.03
CCC1	YLR220W	MPS2	P53159	387 aa		15.24	■□□□□ 0.03
CCC1	YLR220W	HST3	P53687	447 aa		15.24	■□□□□ 0.03
CCC1	YLR220W	VPS16	Q03308	798 aa		15.24	■□□□□ 0.03
CCC1	YLR220W	GAS3	Q03655	524 aa		15.24	■□□□□ 0.03
CCC1	YLR220W	SPT3	P06844	337 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	RSR1	P13856	272 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	NMT1	P14743	455 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	BAS1	P22035	811 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	SPR1	P32603	445 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	YKL100C	P34248	587 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	UBA4	P38820	440 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	DHH1	P39517	506 aa	Known RBP	15.23	■□□□□ 0.03
CCC1	YLR220W	MRX1	P40050	688 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	LSM5	P40089	93 aa	Known RBP	15.23	■□□□□ 0.03
CCC1	YLR220W	UTP18	P40362	594 aa	Predicted RBP	15.23	■□□□□ 0.03
CCC1	YLR220W	STB2	P46679	850 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	SUB1	P54000	292 aa	Known RBP	15.23	■□□□□ 0.03
CCC1	YLR220W	BCH1	Q05029	724 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	PST1	Q12355	444 aa		15.23	■□□□□ 0.03
CCC1	YLR220W	SCL1	P21243	252 aa	Known RBP	15.22	■□□□□ 0.03
CCC1	YLR220W	SEC15	P22224	910 aa		15.22	■□□□□ 0.03
CCC1	YLR220W	YCK2	P23292	546 aa	Known RBP	15.22	■□□□□ 0.03
CCC1	YLR220W	TFB1	P32776	642 aa		15.22	■□□□□ 0.03
CCC1	YLR220W	SOL2	P37262	315 aa		15.22	■□□□□ 0.03
CCC1	YLR220W	DMA1	P38823	416 aa		15.22	■□□□□ 0.03
CCC1	YLR220W	YER034W	P40022	185 aa	Known RBP	15.22	■□□□□ 0.03
CCC1	YLR220W	MNN10	P50108	393 aa	Known RBP	15.22	■□□□□ 0.03
CCC1	YLR220W	YDL121C	Q07541	149 aa		15.22	■□□□□ 0.03
CCC1	YLR220W	CDC21	P06785	304 aa		15.21	■□□□□ 0.03
CCC1	YLR220W	RPC19	P28000	142 aa	Known RBP	15.21	■□□□□ 0.03
CCC1	YLR220W	ATP11	P32453	318 aa		15.21	■□□□□ 0.03
CCC1	YLR220W	GIM4	P40005	111 aa	Known RBP	15.21	■□□□□ 0.03
CCC1	YLR220W	EMP65	P40085	556 aa		15.21	■□□□□ 0.03
CCC1	YLR220W	MRM2	P53123	320 aa		15.21	■□□□□ 0.03
CCC1	YLR220W	ECM9	Q02202	377 aa		15.21	■□□□□ 0.03
CCC1	YLR220W	YML131W	Q03102	365 aa		15.21	■□□□□ 0.03
CCC1	YLR220W	RIF2	Q06208	395 aa		15.21	■□□□□ 0.03
CCC1	YLR220W	CLN2	P20438	545 aa		15.2	■□□□□ 0.02
CCC1	YLR220W	MRPL37	P36532	105 aa		15.2	■□□□□ 0.02
CCC1	YLR220W	UBP14	P38237	781 aa	Known RBP	15.2	■□□□□ 0.02
CCC1	YLR220W	BZZ1	P38822	633 aa		15.2	■□□□□ 0.02
CCC1	YLR220W	SPF1	P39986	1215 aa	Known RBP	15.2	■□□□□ 0.02
CCC1	YLR220W	GPB1	Q08886	897 aa		15.2	■□□□□ 0.02
CCC1	YLR220W	GUK1	P15454	187 aa	Known RBP	15.19	■□□□□ 0.02
CCC1	YLR220W	ART10	P18634	518 aa	Known RBP	15.19	■□□□□ 0.02
CCC1	YLR220W	RPS1A	P33442	255 aa	Known RBP	15.19	■□□□□ 0.02
CCC1	YLR220W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	15.19	■□□□□ 0.02	not detected
CCC1	YLR220W	RIM11	P38615	370 aa		15.19	■□□□□ 0.02
CCC1	YLR220W	YIL108W	P40483	696 aa	Known RBP	15.19	■□□□□ 0.02
CCC1	YLR220W	YGR015C	P53208	328 aa		15.19	■□□□□ 0.02
CCC1	YLR220W	GTR2	P53290	341 aa		15.19	■□□□□ 0.02
CCC1	YLR220W	SWS2	P53937	143 aa		15.19	■□□□□ 0.02
CCC1	YLR220W	TRM82	Q03774	444 aa		15.19	■□□□□ 0.02
CCC1	YLR220W	YFT2	Q06676	274 aa		15.19	■□□□□ 0.02
CCC1	YLR220W	STE3	P06783	470 aa		15.18	■□□□□ 0.02
CCC1	YLR220W	NPP1	P25353	742 aa		15.18	■□□□□ 0.02
CCC1	YLR220W	CRM1	P30822	1084 aa	Known RBP	15.18	■□□□□ 0.02
CCC1	YLR220W	PTH2	P34222	208 aa		15.18	■□□□□ 0.02
CCC1	YLR220W	YRB1	P41920	201 aa	Known RBP	15.18	■□□□□ 0.02
CCC1	YLR220W	PFA3	P42836	336 aa		15.18	■□□□□ 0.02
CCC1	YLR220W	FMN1	Q03778	218 aa		15.18	■□□□□ 0.02
CCC1	YLR220W	VHS1	Q03785	461 aa		15.18	■□□□□ 0.02
CCC1	YLR220W	RIB2	Q12362	591 aa	Known RBP	15.18	■□□□□ 0.02
CCC1	YLR220W	HSH49	Q99181	213 aa	Predicted RBP	15.18	■□□□□ 0.02
CCC1	YLR220W	EXO70	P19658	623 aa		15.17	■□□□□ 0.02
CCC1	YLR220W	YPT35	P38815	214 aa	Known RBP	15.17	■□□□□ 0.02
CCC1	YLR220W	VMA13	P41807	478 aa	Known RBP	15.17	■□□□□ 0.02
CCC1	YLR220W	YPL109C	Q02981	657 aa		15.17	■□□□□ 0.02
CCC1	YLR220W	ROT1	Q03691	256 aa		15.17	■□□□□ 0.02
CCC1	YLR220W	RRP42	Q12277	265 aa	Predicted RBP	15.17	■□□□□ 0.02
CCC1	YLR220W	PRP16	P15938	1071 aa	Predicted RBP	15.16	■□□□□ 0.02
CCC1	YLR220W	CLB1	P24868	471 aa		15.16	■□□□□ 0.02
CCC1	YLR220W	EAP1	P36041	632 aa	Known RBP	15.16	■□□□□ 0.02
CCC1	YLR220W	DED81	P38707	554 aa	Known RBP	15.16	■□□□□ 0.02
CCC1	YLR220W	GIC1	P38785	314 aa		15.16	■□□□□ 0.02
CCC1	YLR220W	YHR127W	P38833	243 aa	Known RBP	15.16	■□□□□ 0.02
CCC1	YLR220W	YJR149W	P47177	404 aa		15.16	■□□□□ 0.02
CCC1	YLR220W	YJR154W	P47181	346 aa		15.16	■□□□□ 0.02
CCC1	YLR220W	NOP19	P53317	196 aa	Predicted RBP	15.16	■□□□□ 0.02
CCC1	YLR220W	TFB4	Q12004	338 aa		15.16	■□□□□ 0.02
CCC1	YLR220W	SDH3	P33421	198 aa		15.15	■□□□□ 0.02
CCC1	YLR220W	GDT1	P38301	280 aa	Predicted RBP	15.15	■□□□□ 0.02
CCC1	YLR220W	GCD10	P41814	478 aa		15.15	■□□□□ 0.02
CCC1	YLR220W	SSU1	P41930	458 aa		15.15	■□□□□ 0.02

Retrieved 100 of 5,963 RNA–protein pairs in 60.2 ms