RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 DSG3P32926 999 aa22.37■■□□□ 1.17
USP39-218ENST00000493829 DEFB115Q30KQ5 88 aa22.37■■□□□ 1.17
USP39-218ENST00000493829 FOXD4L5Q5VV16 416 aaPredicted RBP22.37■■□□□ 1.17
USP39-218ENST00000493829 CPXCR1Q8N123 301 aa22.37■■□□□ 1.17
USP39-218ENST00000493829 FOXD4L4Q8WXT5 416 aaPredicted RBP22.37■■□□□ 1.17
USP39-218ENST00000493829 COA7Q96BR5 231 aa22.37■■□□□ 1.17
USP39-218ENST00000493829 SHISA4Q96DD7 197 aa22.37■■□□□ 1.17
USP39-218ENST00000493829 PTPN18Q99952 460 aa22.37■■□□□ 1.17
USP39-218ENST00000493829 A0A0G2JMZ2 1700 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 PEX10O60683 326 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 CYP2C8P10632 490 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 SYT1P21579 422 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 HOXA7P31268 230 aaPredicted RBP22.36■■□□□ 1.17
USP39-218ENST00000493829 PABPC4Q13310 644 aaKnown RBP eCLIP22.36■■□□□ 1.172e-7■■■□□ 18
USP39-218ENST00000493829 CAPNS2Q96L46 248 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 P2RX7Q99572 595 aaKnown RBP22.36■■□□□ 1.17
USP39-218ENST00000493829 KCNJ14Q9UNX9 436 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 MANSC4A6NHS7 340 aaPredicted RBP22.36■■□□□ 1.17
USP39-218ENST00000493829 RASSF10A6NK89 507 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 H3BQV1 296 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 VWA5AO00534 786 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 AOC2O75106 756 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 OSBPP22059 807 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 TRIM29Q14134 588 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 IFFO2Q5TF58 517 aa22.36■■□□□ 1.17
USP39-218ENST00000493829 RAVER2Q9HCJ3 691 aaKnown RBP22.36■■□□□ 1.17
USP39-218ENST00000493829 STXBP3O00186 592 aa22.35■■□□□ 1.17
USP39-218ENST00000493829 ZBED4O75132 1171 aa22.35■■□□□ 1.17
USP39-218ENST00000493829 NAPAP54920 295 aa22.35■■□□□ 1.17
USP39-218ENST00000493829 TYW1BQ6NUM6 668 aa22.35■■□□□ 1.17
USP39-218ENST00000493829 ANKRD23Q86SG2 305 aa22.35■■□□□ 1.17
USP39-218ENST00000493829 FBXO11Q86XK2 927 aa22.35■■□□□ 1.17
USP39-218ENST00000493829 SLC38A10Q9HBR0 1119 aa22.35■■□□□ 1.17
USP39-218ENST00000493829 IGF2BP3O00425 579 aaKnown RBP eCLIP22.34■■□□□ 1.17
USP39-218ENST00000493829 PDCP20941 246 aa22.34■■□□□ 1.17
USP39-218ENST00000493829 DDIT3P35638 169 aa22.34■■□□□ 1.17
USP39-218ENST00000493829 HERVK_113P62684 666 aa22.34■■□□□ 1.17
USP39-218ENST00000493829 AGBL1Q96MI9 1066 aa22.34■■□□□ 1.17
USP39-218ENST00000493829 PAGR1Q9BTK6 254 aa22.34■■□□□ 1.17
USP39-218ENST00000493829 BARHL2Q9NY43 387 aa22.34■■□□□ 1.17
USP39-218ENST00000493829 STX6O43752 255 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 KIF23Q02241 960 aaPredicted RBP22.33■■□□□ 1.17
USP39-218ENST00000493829 PLS1Q14651 629 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 KRT40Q6A162 431 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 AMNQ9BXJ7 453 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 HOXC10Q9NYD6 342 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 PNMA3Q9UL41 463 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 CCPG1Q9ULG6 757 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 PCDHA1Q9Y5I3 950 aa22.33■■□□□ 1.17
USP39-218ENST00000493829 POTEEQ6S8J3 1075 aa22.33■■□□□ 1.16
USP39-218ENST00000493829 SMCR8Q8TEV9 937 aaPredicted RBP22.33■■□□□ 1.16
USP39-218ENST00000493829 HOMER2Q9NSB8 354 aa22.33■■□□□ 1.16
USP39-218ENST00000493829 ZNF536O15090 1300 aa22.33■■□□□ 1.16
USP39-218ENST00000493829 MYPNQ86TC9 1320 aa22.33■■□□□ 1.16
USP39-218ENST00000493829 TESPA1A2RU30 521 aaPredicted RBP22.32■■□□□ 1.16
USP39-218ENST00000493829 XBP1P17861 261 aa22.32■■□□□ 1.16
USP39-218ENST00000493829 TMEM132BQ14DG7 1078 aa22.32■■□□□ 1.16
USP39-218ENST00000493829 ICAM1P05362 532 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 NLRP5P59047 1200 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 SREBF2Q12772 1141 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 MCTP1Q6DN14 999 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 REPS2Q8NFH8 660 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 FBXO18Q8NFZ0 1043 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 ADAMTS5Q9UNA0 930 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 MTMR6Q9Y217 621 aa22.31■■□□□ 1.16
USP39-218ENST00000493829 ALAS1P13196 640 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 NOGQ13253 232 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 SNRNP48Q6IEG0 339 aaKnown RBP22.3■■□□□ 1.16
USP39-218ENST00000493829 FERMT3Q86UX7 667 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 IFNL1Q8IU54 200 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 CCDC148Q8NFR7 591 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 BTBD7Q9P203 1132 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 SLC45A1Q9Y2W3 748 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 ADAMTS3O15072 1205 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 PARK7Q99497 189 aaKnown RBP22.3■■□□□ 1.16
USP39-218ENST00000493829 PHF20Q9BVI0 1012 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 TXNRD2Q9NNW7 524 aa22.3■■□□□ 1.16
USP39-218ENST00000493829 ZNF214Q9UL59 606 aaPredicted RBP22.3■■□□□ 1.16
USP39-218ENST00000493829 SMCHD1A6NHR9 2005 aa22.29■■□□□ 1.16
USP39-218ENST00000493829 WDR33Q9C0J8 1336 aaKnown RBP22.29■■□□□ 1.16
USP39-218ENST00000493829 hCG_1984214I3L0E3 225 aa22.29■■□□□ 1.16
USP39-218ENST00000493829 MMP1P03956 469 aa22.29■■□□□ 1.16
USP39-218ENST00000493829 LBX2Q6XYB7 198 aa22.29■■□□□ 1.16
USP39-218ENST00000493829 ZNF713Q8N859 430 aaPredicted RBP22.29■■□□□ 1.16
USP39-218ENST00000493829 CCDC12Q8WUD4 166 aaPredicted RBP22.29■■□□□ 1.16
USP39-218ENST00000493829 SH3GLB2Q9NR46 395 aa22.29■■□□□ 1.16
USP39-218ENST00000493829 SMCO2A6NFE2 343 aa22.28■■□□□ 1.16
USP39-218ENST00000493829 CNMDO75829 334 aa22.28■■□□□ 1.16
USP39-218ENST00000493829 FDX1P10109 184 aa22.28■■□□□ 1.16
USP39-218ENST00000493829 VEGFBP49765 207 aa22.28■■□□□ 1.16
USP39-218ENST00000493829 TAF1CQ15572 869 aaPredicted RBP22.28■■□□□ 1.16
USP39-218ENST00000493829 OXER1Q8TDS5 423 aa22.28■■□□□ 1.16
USP39-218ENST00000493829 RIPK3Q9Y572 518 aa22.28■■□□□ 1.16
USP39-218ENST00000493829 RBBP6Q7Z6E9 1792 aaKnown RBP22.28■■□□□ 1.16
USP39-218ENST00000493829 ADCY7P51828 1080 aa22.27■■□□□ 1.16
USP39-218ENST00000493829 GNL2Q13823 731 aaKnown RBP22.27■■□□□ 1.16
USP39-218ENST00000493829 PPP1R18Q6NYC8 613 aa22.27■■□□□ 1.16
USP39-218ENST00000493829 DIS3L2Q8IYB7 885 aaKnown RBP22.27■■□□□ 1.16
USP39-218ENST00000493829 TEX13BQ9BXU2 312 aa22.27■■□□□ 1.16
USP39-218ENST00000493829 CHMP5Q9NZZ3 219 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms