RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	MPH2	P0CD99	609 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	SEC63	P14906	663 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	NPP1	P25353	742 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	OXP1	P28273	1286 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	PDB1	P32473	366 aa	Known RBP	14.03	□□□□□ -0.16
DEP1	YAL013W	PXA2	P34230	853 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	ASK1	P35734	292 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	MED6	P38782	295 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	IME4	P41833	600 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	AIF1	P52923	378 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	MRM2	P53123	320 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	SPO20	Q04359	397 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	ICT1	Q12385	394 aa		14.03	□□□□□ -0.16
DEP1	YAL013W	RAD3	P06839	778 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	SEC53	P07283	254 aa	Known RBP	14.02	□□□□□ -0.17
DEP1	YAL013W	SPS1	P08458	490 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	SGF29	P25554	259 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	YCR090C	P25654	182 aa	Known RBP	14.02	□□□□□ -0.17
DEP1	YAL013W	PTM1	P32857	523 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	STE5	P32917	917 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	STE13	P33894	931 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	THI80	P35202	319 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	STB6	P36085	766 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	EMC4	P53073	190 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	IMP4	P53941	290 aa	Known RBP	14.02	□□□□□ -0.17
DEP1	YAL013W	VAC7	P53950	1165 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	HDA3	Q06623	655 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	MPD2	Q99316	277 aa		14.02	□□□□□ -0.17
DEP1	YAL013W	RPS14A	P06367	137 aa	Known RBP	14.01	□□□□□ -0.17
DEP1	YAL013W	HIS5	P07172	385 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	IMG2	P25642	146 aa	Predicted RBP	14.01	□□□□□ -0.17
DEP1	YAL013W	BRF1	P29056	596 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	MLS1	P30952	554 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	SIP2	P34164	415 aa	Known RBP	14.01	□□□□□ -0.17
DEP1	YAL013W	SEC31	P38968	1273 aa	Known RBP	14.01	□□□□□ -0.17
DEP1	YAL013W	TIM17	P39515	158 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	RPS14B	P39516	138 aa	Known RBP	14.01	□□□□□ -0.17
DEP1	YAL013W	OSW5	P40219	148 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	REF2	P42073	533 aa	Predicted RBP	14.01	□□□□□ -0.17
DEP1	YAL013W	CRN1	Q06440	651 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	IRC10	Q08118	586 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	ALR1	Q08269	859 aa		14.01	□□□□□ -0.17
DEP1	YAL013W	PPZ1	P26570	692 aa		14	□□□□□ -0.17
DEP1	YAL013W	FRE4	P53746	719 aa		14	□□□□□ -0.17
DEP1	YAL013W	SLM2	P53955	656 aa		14	□□□□□ -0.17
DEP1	YAL013W	UBP2	Q01476	1272 aa		14	□□□□□ -0.17
DEP1	YAL013W	PPN1	Q04119	674 aa		14	□□□□□ -0.17
DEP1	YAL013W	SEC10	Q06245	871 aa		14	□□□□□ -0.17
DEP1	YAL013W	UPC2	Q12151	913 aa		14	□□□□□ -0.17
DEP1	YAL013W	MSF1	P08425	469 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	APA1	P16550	321 aa	Known RBP	13.99	□□□□□ -0.17
DEP1	YAL013W	GAL11	P19659	1081 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	UBA1	P22515	1024 aa	Known RBP	13.99	□□□□□ -0.17
DEP1	YAL013W	MRM1	P25270	412 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	COA1	P40452	197 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	UBP6	P43593	499 aa	Known RBP	13.99	□□□□□ -0.17
DEP1	YAL013W	RNR4	P49723	345 aa	Known RBP	13.99	□□□□□ -0.17
DEP1	YAL013W	ARP4	P80428	489 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	RMI1	Q02685	241 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	NHP10	Q03435	203 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	GOT1	Q03554	138 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	RCO1	Q04779	684 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	RAD59	Q12223	238 aa		13.99	□□□□□ -0.17
DEP1	YAL013W	RPB4	P20433	221 aa	Predicted RBP	13.98	□□□□□ -0.17
DEP1	YAL013W	SPS19	P32573	292 aa	Known RBP	13.98	□□□□□ -0.17
DEP1	YAL013W	YBR259W	P38338	688 aa		13.98	□□□□□ -0.17
DEP1	YAL013W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	13.98	□□□□□ -0.17	RIP-Chip
DEP1	YAL013W	ATH1	P48016	1211 aa		13.98	□□□□□ -0.17
DEP1	YAL013W	YPL109C	Q02981	657 aa		13.98	□□□□□ -0.17
DEP1	YAL013W	HEL2	Q05580	639 aa	Known RBP	13.98	□□□□□ -0.17
DEP1	YAL013W	HBT1	Q07653	1046 aa	Known RBP	13.98	□□□□□ -0.17
DEP1	YAL013W	SNT1	P25357	1226 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	TOA1	P32773	286 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	PMT1	P33775	817 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	DCW1	P36091	449 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	BZZ1	P38822	633 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	STN1	P38960	494 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	PRM2	P40534	656 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	RSM7	P47150	247 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	GTR1	Q00582	310 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	YMR178W	Q03219	274 aa	Known RBP	13.97	□□□□□ -0.17
DEP1	YAL013W	GAS3	Q03655	524 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	CIA1	Q05583	330 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	OSW1	Q08692	278 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	BUD7	Q08754	746 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	TGL5	Q12043	749 aa		13.97	□□□□□ -0.17
DEP1	YAL013W	RNA1	P11745	407 aa	Known RBP	13.96	□□□□□ -0.17
DEP1	YAL013W	SEC15	P22224	910 aa		13.96	□□□□□ -0.17
DEP1	YAL013W	SKT5	P34226	696 aa		13.96	□□□□□ -0.17
DEP1	YAL013W	YHR045W	P38775	560 aa		13.96	□□□□□ -0.17
DEP1	YAL013W	LRP1	P38801	184 aa	Known RBP	13.96	□□□□□ -0.17
DEP1	YAL013W	GAT1	P43574	510 aa		13.96	□□□□□ -0.17
DEP1	YAL013W	CLD1	P53264	445 aa		13.96	□□□□□ -0.17
DEP1	YAL013W	LSM3	P57743	89 aa	Known RBP	13.96	□□□□□ -0.17
DEP1	YAL013W	PEX13	P80667	386 aa		13.96	□□□□□ -0.17
DEP1	YAL013W	NSE1	Q07913	336 aa		13.96	□□□□□ -0.17
DEP1	YAL013W	FAB1	P34756	2278 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	HEM2	P05373	342 aa		13.95	□□□□□ -0.18
DEP1	YAL013W	SBP1	P10080	294 aa	Known RBP	13.95	□□□□□ -0.18
DEP1	YAL013W	TSC10	P38342	320 aa		13.95	□□□□□ -0.18

Retrieved 100 of 5,963 RNA–protein pairs in 67.7 ms