RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 ZIM3Q96PE6 472 aa13.13□□□□□ -0.31
SMARCA1-201ENST00000371121 SALL4Q9UJQ4 1053 aa13.13□□□□□ -0.31
SMARCA1-201ENST00000371121 DISP2A7MBM2 1401 aa13.13□□□□□ -0.31
SMARCA1-201ENST00000371121 RIC1Q4ADV7 1423 aa13.13□□□□□ -0.31
SMARCA1-201ENST00000371121 HDGFP51858 240 aaKnown RBP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 MAP9Q49MG5 647 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 CABS1Q96KC9 395 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 GNL3LQ9NVN8 582 aaKnown RBP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 DDX20Q9UHI6 824 aaKnown RBP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 ZSCAN5CA6NGD5 496 aaPredicted RBP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 TDO2P48775 406 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 SEC24CP53992 1094 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 ATP2B2Q01814 1243 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 HAUS3Q68CZ6 603 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 PDXDC2PQ6P474 469 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 TLDC1Q6P9B6 456 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 STAG1Q8WVM7 1258 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 APPBP2Q92624 585 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 BLZF1Q9H2G9 400 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 ZSWIM5Q9P217 1185 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 DACH1Q9UI36 760 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 TRIM49BA6NDI0 452 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 KIF1CO43896 1103 aaKnown RBP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 RTN2O75298 545 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 IARSP41252 1262 aaKnown RBP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 MCAMP43121 646 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 TRADDQ15628 312 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 AMOTQ4VCS5 1084 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 FKBP15Q5T1M5 1219 aa13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 SND1Q7KZF4 910 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 EPB41L4AQ9HCS5 686 aaPredicted RBP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 AATFQ9NY61 560 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMARCA1-201ENST00000371121 EYA2O00167 538 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 ZEB2O60315 1214 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 PDHBP11177 359 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 KCTD16Q68DU8 428 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 ANKRD18AQ8IVF6 992 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 CCDC13Q8IYE1 715 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 IQCKQ8N0W5 287 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 MMGT1Q8N4V1 131 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 LRRC15Q8TF66 581 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 AIDAQ96BJ3 306 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 NUP88Q99567 741 aaPredicted RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 FOXP1Q9H334 677 aaPredicted RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 ACBD3Q9H3P7 528 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 SLC52A2Q9HAB3 445 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 TCRBV5S4A2TA0A5A2 114 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 DNM1LO00429 736 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 ECM2O94769 699 aaPredicted RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 LSP1P33241 339 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 ATP1A2P50993 1020 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 KCTD19Q17RG1 926 aaPredicted RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 YTHDF3Q7Z739 585 aaKnown RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 VCPKMTQ9H867 229 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 SMIM22K7EJ46 135 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 PLEKP08567 350 aaPredicted RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 HDLBPQ00341 1268 aaKnown RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 ACTN3Q08043 901 aaPredicted RBP13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 TRDNQ13061 729 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 WASHC4Q2M389 1173 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 CTAGE1Q96RT6 745 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 HAUS4Q9H6D7 363 aa13.11□□□□□ -0.31
SMARCA1-201ENST00000371121 ZBTB43O43298 467 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 IFNAR1P17181 557 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 IL15P40933 162 aaPredicted RBP13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 POTEDQ86YR6 584 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 OSBPL7Q9BZF2 842 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 FAM107BQ9H098 131 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 LRRC4CQ9HCJ2 640 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 NHSL1Q5SYE7 1610 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 KCNJ18B7U540 433 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 CLGNO14967 610 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 CYP27A1Q02318 531 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 KCNJ12Q14500 433 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 C1orf141Q5JVX7 400 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 CCDC122Q5T0U0 273 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 GSDMAQ96QA5 445 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 GDAQ9Y2T3 454 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 MEGF6O75095 1541 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 MYH1P12882 1939 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 PAX7P23759 505 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 TCIRG1Q13488 830 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 PKN1Q16512 942 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 ZNF473Q8WTR7 871 aaKnown RBP13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 TNFRSF25Q93038 417 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 CRACR2AQ9BSW2 395 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 CABP5Q9NP86 173 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 CAPN11Q9UMQ6 739 aa13.1□□□□□ -0.31
SMARCA1-201ENST00000371121 DLEC1Q9Y238 1755 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 N4BP3O15049 544 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 ELF1P32519 619 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 TTF1Q15361 905 aaPredicted RBP13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 GBP6Q6ZN66 633 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 TTLL7Q6ZT98 887 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 KRT26Q7Z3Y9 468 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 RALYLQ86SE5 291 aaKnown RBP13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 RPAINQ86UA6 219 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 CAVIN3Q969G5 261 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 KLC4Q9NSK0 619 aa13.09□□□□□ -0.31
SMARCA1-201ENST00000371121 SNX12Q9UMY4 172 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms