RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C GLO1P50107 326 aa2.43□□□□□ -2.02
UBP11YKR098C YGR250CP53316 781 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C DCP2P53550 970 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C TIM44Q01852 431 aa2.43□□□□□ -2.02
UBP11YKR098C HRD3Q05787 833 aa2.43□□□□□ -2.02
UBP11YKR098C TCO89Q08921 799 aa2.43□□□□□ -2.02
UBP11YKR098C PMA2P19657 947 aa2.43□□□□□ -2.02
UBP11YKR098C LCB1P25045 558 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C OCA4P25366 362 aa2.43□□□□□ -2.02
UBP11YKR098C PEP3P27801 918 aa2.43□□□□□ -2.02
UBP11YKR098C YJU2P28320 278 aaPredicted RBP2.43□□□□□ -2.02
UBP11YKR098C MTH1P35198 433 aa2.43□□□□□ -2.02
UBP11YKR098C NTR2P36118 322 aaPredicted RBP2.43□□□□□ -2.02
UBP11YKR098C AAP1P37898 856 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C SRO77P38163 1010 aa2.43□□□□□ -2.02
UBP11YKR098C UTP9P38882 575 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C YEL057CP39983 233 aa2.43□□□□□ -2.02
UBP11YKR098C PHM8P40025 321 aa2.43□□□□□ -2.02
UBP11YKR098C LSM5P40089 93 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C RGI2P40188 164 aa2.43□□□□□ -2.02
UBP11YKR098C SLI1P53304 468 aa2.43□□□□□ -2.02
UBP11YKR098C ADE16P54113 591 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C LYS21Q12122 440 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C AHA1Q12449 350 aaKnown RBP2.43□□□□□ -2.02
UBP11YKR098C RPL7AP05737 244 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C KIN3P22209 435 aa2.42□□□□□ -2.02
UBP11YKR098C PDB1P32473 366 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C EMP70P32802 667 aa2.42□□□□□ -2.02
UBP11YKR098C YNG2P38806 282 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C CCT6P39079 546 aa2.42□□□□□ -2.02
UBP11YKR098C GPD2P41911 440 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C LCL3P53153 274 aa2.42□□□□□ -2.02
UBP11YKR098C RSM28Q03430 361 aa2.42□□□□□ -2.02
UBP11YKR098C ARG7Q04728 441 aa2.42□□□□□ -2.02
UBP11YKR098C YEH1Q07804 573 aa2.42□□□□□ -2.02
UBP11YKR098C RPL7BQ12213 244 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C SNU66Q12420 587 aaPredicted RBP2.42□□□□□ -2.02
UBP11YKR098C RTN2Q12443 393 aa2.42□□□□□ -2.02
UBP11YKR098C YPT6Q99260 215 aa2.42□□□□□ -2.02
UBP11YKR098C HOM3P10869 527 aa2.42□□□□□ -2.02
UBP11YKR098C STE12P13574 688 aa2.42□□□□□ -2.02
UBP11YKR098C PWP1P21304 576 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C GSH1P32477 678 aa2.42□□□□□ -2.02
UBP11YKR098C KES1P35844 434 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C BYE1P36106 594 aa2.42□□□□□ -2.02
UBP11YKR098C MOH1P38191 138 aa2.42□□□□□ -2.02
UBP11YKR098C MUP3P38734 546 aa2.42□□□□□ -2.02
UBP11YKR098C SEC31P38968 1273 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C EXO1P39875 702 aa2.42□□□□□ -2.02
UBP11YKR098C AXL1P40851 1208 aa2.42□□□□□ -2.02
UBP11YKR098C RPN11P43588 306 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C RSC1P53236 928 aa2.42□□□□□ -2.02
UBP11YKR098C YML037CQ03703 340 aa2.42□□□□□ -2.02
UBP11YKR098C YMR155WQ03795 547 aa2.42□□□□□ -2.02
UBP11YKR098C GIS1Q03833 894 aa2.42□□□□□ -2.02
UBP11YKR098C MRH1Q12117 320 aaPredicted RBP2.42□□□□□ -2.02
UBP11YKR098C GET3Q12154 354 aaKnown RBP2.42□□□□□ -2.02
UBP11YKR098C GRX6Q12438 231 aa2.42□□□□□ -2.02
UBP11YKR098C SEC3P33332 1336 aaKnown RBP2.41□□□□□ -2.02
UBP11YKR098C RPC53P25441 422 aa2.41□□□□□ -2.02
UBP11YKR098C DMC1P25453 334 aa2.41□□□□□ -2.02
UBP11YKR098C PTC6P25646 442 aa2.41□□□□□ -2.02
UBP11YKR098C ORC2P32833 620 aa2.41□□□□□ -2.02
UBP11YKR098C OPT1P40897 799 aa2.41□□□□□ -2.02
UBP11YKR098C STR3P53101 465 aaKnown RBP2.41□□□□□ -2.02
UBP11YKR098C GND2P53319 492 aa2.41□□□□□ -2.02
UBP11YKR098C RAD34Q06665 692 aa2.41□□□□□ -2.02
UBP11YKR098C CYK3Q07533 885 aa2.41□□□□□ -2.02
UBP11YKR098C PSR1Q07800 427 aa2.41□□□□□ -2.02
UBP11YKR098C YJR112W-AQ3E743 109 aa2.41□□□□□ -2.02
UBP11YKR098C YMR084WA2P2R3 262 aa2.4□□□□□ -2.02
UBP11YKR098C ARD1P07347 238 aaPredicted RBP2.4□□□□□ -2.02
UBP11YKR098C CDC43P18898 376 aa2.4□□□□□ -2.02
UBP11YKR098C AAD3P25612 363 aa2.4□□□□□ -2.02
UBP11YKR098C VMA8P32610 256 aaKnown RBP2.4□□□□□ -2.02
UBP11YKR098C YKL050CP35736 922 aa2.4□□□□□ -2.02
UBP11YKR098C MNN2P38069 597 aa2.4□□□□□ -2.02
UBP11YKR098C AGP2P38090 596 aa2.4□□□□□ -2.02
UBP11YKR098C REG2P38232 338 aa2.4□□□□□ -2.02
UBP11YKR098C ECM10P39987 644 aa2.4□□□□□ -2.02
UBP11YKR098C MET28P40573 187 aa2.4□□□□□ -2.02
UBP11YKR098C IRC24P40580 263 aa2.4□□□□□ -2.02
UBP11YKR098C VPS73P53142 486 aaKnown RBP2.4□□□□□ -2.02
UBP11YKR098C JJJ1P53863 590 aa2.4□□□□□ -2.02
UBP11YKR098C CTF4Q01454 927 aa2.4□□□□□ -2.02
UBP11YKR098C TMN2Q04562 672 aa2.4□□□□□ -2.02
UBP11YKR098C BUD7Q08754 746 aa2.4□□□□□ -2.02
UBP11YKR098C LEA1Q08963 238 aaPredicted RBP2.4□□□□□ -2.02
UBP11YKR098C SFI1Q12369 946 aa2.4□□□□□ -2.02
UBP11YKR098C RTC1Q08281 1341 aa2.4□□□□□ -2.02
UBP11YKR098C DFR1P07807 211 aaKnown RBP RIP-Chip data2.4□□□□□ -2.03not detected
UBP11YKR098C PET111P08468 800 aa2.4□□□□□ -2.03
UBP11YKR098C SAT4P25333 603 aaKnown RBP2.4□□□□□ -2.03
UBP11YKR098C YIH1P25637 258 aa2.4□□□□□ -2.03
UBP11YKR098C YMC1P32331 307 aa2.4□□□□□ -2.03
UBP11YKR098C UGP1P32861 499 aaKnown RBP2.4□□□□□ -2.03
UBP11YKR098C SOF1P33750 489 aaKnown RBP2.4□□□□□ -2.03
UBP11YKR098C OAR1P35731 278 aa2.4□□□□□ -2.03
UBP11YKR098C LHS1P36016 881 aa2.4□□□□□ -2.03
UBP11YKR098C MRX1P40050 688 aa2.4□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 112.5 ms