RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MB21D2Q8IYB1 491 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-206ENST00000405805 MON2Q7Z3U7 1717 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 KNDC1Q76NI1 1749 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 IKBKBO14920 756 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 TTC38Q5R3I4 469 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 MICAL1Q8TDZ2 1067 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 CTAGE1Q96RT6 745 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 COL15A1P39059 1388 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 NCAPD2Q15021 1401 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 RGPD8O14715 1765 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-206ENST00000405805 TMCO5BA8MYB1 307 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 SH2B2O14492 632 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-206ENST00000405805 PTGDRQ13258 359 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 CNGA4Q8IV77 575 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 NGLY1Q96IV0 654 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 TFCP2L1Q9NZI6 479 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 TNKSO95271 1327 aa13.4□□□□□ -0.26
HMGB1-206ENST00000405805 ADD2P35612 726 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 IKQ13123 557 aaPredicted RBP13.39□□□□□ -0.27
HMGB1-206ENST00000405805 LCORLQ8N3X6 602 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 MCM9Q9NXL9 1143 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 FAN1Q9Y2M0 1017 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 RPSAP08865 295 aaKnown RBP13.39□□□□□ -0.27
HMGB1-206ENST00000405805 KAT14Q9H8E8 782 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 AATFQ9NY61 560 aaKnown RBP eCLIP13.39□□□□□ -0.27
HMGB1-206ENST00000405805 USP17L12C9JPN9 530 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 USP17L21D6R901 530 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 STX10O60499 249 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 TBC1D8BQ0IIM8 1120 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 HLTFQ14527 1009 aaKnown RBP eCLIP13.39□□□□□ -0.27
HMGB1-206ENST00000405805 PUM3Q15397 648 aaKnown RBP13.39□□□□□ -0.27
HMGB1-206ENST00000405805 SYCP1Q15431 976 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 TMTC2Q8N394 836 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 NELFBQ8WX92 580 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 GPKOWQ92917 476 aaPredicted RBP eCLIP13.39□□□□□ -0.27
HMGB1-206ENST00000405805 CCDC114Q96M63 670 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 PDE8BO95263 885 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 RBM43Q6ZSC3 357 aaKnown RBP13.39□□□□□ -0.27
HMGB1-206ENST00000405805 FMNL3Q8IVF7 1028 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 HPS5Q9UPZ3 1129 aa13.39□□□□□ -0.27
HMGB1-206ENST00000405805 TUBB4AP04350 444 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 ZBTB38Q8NAP3 1195 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-206ENST00000405805 IFT81Q8WYA0 676 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 UBA5Q9GZZ9 404 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 TFR2Q9UP52 801 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 SRGAP2O75044 1071 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 LETM2Q2VYF4 491 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 ZNF444Q8N0Y2 327 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-206ENST00000405805 CCDC42Q96M95 316 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 MEGF6O75095 1541 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 CTSWP56202 376 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 SPTY2D1Q68D10 685 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-206ENST00000405805 VEZTQ9HBM0 779 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 TCP11L1Q9NUJ3 509 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 CAPN7Q9Y6W3 813 aa13.38□□□□□ -0.27
HMGB1-206ENST00000405805 DYNLL1P63167 89 aaKnown RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 PAK1Q13153 545 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 LPIN2Q92539 896 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 ANKIB1Q9P2G1 1089 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 FER1L4A9Z1Z3 1794 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 GOLGA6L10A6NI86 522 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 PSMA7O14818 248 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 CYP27A1Q02318 531 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 MAP9Q49MG5 647 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 CC2D1AQ6P1N0 951 aaPredicted RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 MRPL44Q9H9J2 332 aaKnown RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 POLD4Q9HCU8 107 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 ABCB6Q9NP58 842 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 MRFAP1Q9Y605 127 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 UBN2Q6ZU65 1347 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 PPP6R2O75170 966 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 RABL6Q3YEC7 729 aaPredicted RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 GIGYF2Q6Y7W6 1299 aaKnown RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 ALDH8A1Q9H2A2 487 aaPredicted RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 FAM207AQ9NSI2 230 aaPredicted RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 SEPT11Q9NVA2 429 aaKnown RBP13.37□□□□□ -0.27
HMGB1-206ENST00000405805 ADAM21Q9UKJ8 722 aa13.37□□□□□ -0.27
HMGB1-206ENST00000405805 KDM6AO15550 1401 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 TADA3O75528 432 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PAFAH1B1P43034 410 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PPARAQ07869 468 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 KIF5AQ12840 1032 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 GSPT2Q8IYD1 628 aaKnown RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 GOLGA5Q8TBA6 731 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PCCAP05165 728 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 RASGRF1Q13972 1273 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 CCDC152Q4G0S7 254 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 FAM182BQ5T319 152 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 MCTP2Q6DN12 878 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 MICALCLQ6ZW33 695 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 SMIM5Q71RC9 77 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 FOXP4Q8IVH2 680 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 TTLL11Q8NHH1 800 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 C8orf37Q96NL8 207 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 ATG3Q9NT62 314 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 EXOC1Q9NV70 894 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PHLPP2Q6ZVD8 1323 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PDE8AO60658 829 aa13.36□□□□□ -0.27
HMGB1-206ENST00000405805 PLEKHA8P1O95397 391 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms