RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CTAGE6Q86UF2 777 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 CTAGE4Q8IX94 777 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 ABHD10Q9NUJ1 306 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 REXO2Q9Y3B8 237 aaKnown RBP20.91■□□□□ 0.94
CCDC3-201ENST00000378825 N4BP3O15049 544 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 GUCA1BQ9UMX6 200 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 PAPPAQ13219 1627 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 IRS4O14654 1257 aaPredicted RBP20.9■□□□□ 0.94
CCDC3-201ENST00000378825 PDE8BO95263 885 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 DEXIO95424 95 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 LEKR1Q6ZMV7 388 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 SH3RF1Q7Z6J0 888 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 GSPT2Q8IYD1 628 aaKnown RBP20.9■□□□□ 0.94
CCDC3-201ENST00000378825 ZNF654Q8IZM8 581 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 FANCBQ8NB91 859 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 WASF1Q92558 559 aa20.9■□□□□ 0.94
CCDC3-201ENST00000378825 NUP88Q99567 741 aaPredicted RBP20.9■□□□□ 0.94
CCDC3-201ENST00000378825 ADAMTS3O15072 1205 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 TNNT3P45378 269 aaPredicted RBP20.89■□□□□ 0.93
CCDC3-201ENST00000378825 TDO2P48775 406 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 RASGRF1Q13972 1273 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 TTF1Q15361 905 aaPredicted RBP20.89■□□□□ 0.93
CCDC3-201ENST00000378825 NAA15Q9BXJ9 866 aaKnown RBP20.89■□□□□ 0.93
CCDC3-201ENST00000378825 TRIM75PA6NK02 468 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 AMPD2Q01433 879 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 AKAP17AQ02040 695 aaKnown RBP20.89■□□□□ 0.93
CCDC3-201ENST00000378825 MTRQ99707 1265 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 TSPYL1Q9H0U9 437 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 FAM204AQ9H8W3 233 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 CWC15Q9P013 229 aaKnown RBP20.89■□□□□ 0.93
CCDC3-201ENST00000378825 FBXO3Q9UK99 471 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 XDHP47989 1333 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 ABCC12Q96J65 1359 aa20.89■□□□□ 0.93
CCDC3-201ENST00000378825 ERLIN1O75477 346 aa20.88■□□□□ 0.93
CCDC3-201ENST00000378825 CYP19A1P11511 503 aaPredicted RBP20.88■□□□□ 0.93
CCDC3-201ENST00000378825 CTSWP56202 376 aa20.88■□□□□ 0.93
CCDC3-201ENST00000378825 KANK3Q6NY19 840 aa20.88■□□□□ 0.93
CCDC3-201ENST00000378825 LRRC31Q6UY01 552 aa20.88■□□□□ 0.93
CCDC3-201ENST00000378825 CNGA4Q8IV77 575 aa20.88■□□□□ 0.93
CCDC3-201ENST00000378825 EEF2KMTQ96G04 330 aa20.88■□□□□ 0.93
CCDC3-201ENST00000378825 AATFQ9NY61 560 aaKnown RBP eCLIP20.88■□□□□ 0.93
CCDC3-201ENST00000378825 MYO6Q9UM54 1294 aa20.88■□□□□ 0.93
CCDC3-201ENST00000378825 LRP6O75581 1613 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 KRT9P35527 623 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 PKN1Q16512 942 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 PLA2G12BQ9BX93 195 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 SLC4A4Q9Y6R1 1079 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 ANKRD18BA2A2Z9 1011 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 PLEKHA8P1O95397 391 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 FILIP1LQ4L180 1135 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 RRAGBQ5VZM2 374 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 IQUBQ8NA54 791 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 SPATA5Q8NB90 893 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 SDR42E1Q8WUS8 393 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 CAPZA3Q96KX2 299 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 TTF2Q9UNY4 1162 aaKnown RBP20.87■□□□□ 0.93
CCDC3-201ENST00000378825 IQSEC3Q9UPP2 1182 aaPredicted RBP20.87■□□□□ 0.93
CCDC3-201ENST00000378825 CHD4Q14839 1912 aa20.87■□□□□ 0.93
CCDC3-201ENST00000378825 MINDY4BA8MYZ0 360 aa20.86■□□□□ 0.93
CCDC3-201ENST00000378825 ARID4AP29374 1257 aaPredicted RBP20.86■□□□□ 0.93
CCDC3-201ENST00000378825 ALX1Q15699 326 aa20.86■□□□□ 0.93
CCDC3-201ENST00000378825 MMS19Q96T76 1030 aa20.86■□□□□ 0.93
CCDC3-201ENST00000378825 GDAQ9Y2T3 454 aa20.86■□□□□ 0.93
CCDC3-201ENST00000378825 TRIM49BA6NDI0 452 aa20.85■□□□□ 0.93
CCDC3-201ENST00000378825 EIF3JO75822 258 aaKnown RBP20.85■□□□□ 0.93
CCDC3-201ENST00000378825 V9GY48 417 aaPredicted RBP20.85■□□□□ 0.93
CCDC3-201ENST00000378825 CYP2D7A0A087X1C5 515 aa20.85■□□□□ 0.93
CCDC3-201ENST00000378825 ATP1A1P05023 1023 aaKnown RBP20.85■□□□□ 0.93
CCDC3-201ENST00000378825 VEGFAP15692 232 aaPredicted RBP20.85■□□□□ 0.93
CCDC3-201ENST00000378825 COPB1P53618 953 aaKnown RBP20.85■□□□□ 0.93
CCDC3-201ENST00000378825 CEP131Q9UPN4 1083 aa20.85■□□□□ 0.93
CCDC3-201ENST00000378825 POTEB2H3BUK9 544 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 RNF40O75150 1001 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 SYF2O95926 243 aaKnown RBP20.84■□□□□ 0.93
CCDC3-201ENST00000378825 FECHP22830 423 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 DZIP3Q86Y13 1208 aaKnown RBP20.84■□□□□ 0.93
CCDC3-201ENST00000378825 TMTC1Q8IUR5 882 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 KRT23Q9C075 422 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 MYBL2P10244 700 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 EVX2Q03828 476 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 WHAMMP3Q1A5X7 153 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 HSP90B2PQ58FF3 399 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 IPO4Q8TEX9 1081 aaKnown RBP20.84■□□□□ 0.93
CCDC3-201ENST00000378825 CTAGE1Q96RT6 745 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 ABCA3Q99758 1704 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 PTGDRQ13258 359 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 ADGRA1Q86SQ6 560 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 ZNF512BQ96KM6 892 aaPredicted RBP20.84■□□□□ 0.93
CCDC3-201ENST00000378825 GSDMAQ96QA5 445 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 CNNM2Q9H8M5 875 aa20.84■□□□□ 0.93
CCDC3-201ENST00000378825 MYH6P13533 1939 aa20.83■□□□□ 0.93
CCDC3-201ENST00000378825 TNKSO95271 1327 aa20.83■□□□□ 0.93
CCDC3-201ENST00000378825 TTC26A0AVF1 554 aa20.83■□□□□ 0.93
CCDC3-201ENST00000378825 ERICH2A1L162 156 aa20.83■□□□□ 0.93
CCDC3-201ENST00000378825 PES1O00541 588 aaKnown RBP20.83■□□□□ 0.93
CCDC3-201ENST00000378825 IL17AQ16552 155 aa20.83■□□□□ 0.93
CCDC3-201ENST00000378825 CYP26C1Q6V0L0 522 aa20.83■□□□□ 0.93
CCDC3-201ENST00000378825 STAG1Q8WVM7 1258 aa20.83■□□□□ 0.93
CCDC3-201ENST00000378825 NOP2P46087 812 aaKnown RBP20.83■□□□□ 0.92
CCDC3-201ENST00000378825 SART3Q15020 963 aaKnown RBP20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms