RNA–Protein interactions for RNA: YNL025C

SSN8, Transcript of Cyclin-like component of the RNA polymerase II holoenzyme, yeast

Gene SSN8, Length 972 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSN8	YNL025C	THI6	P41835	540 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	SHR5	P41912	237 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	IRC5	P43610	853 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	YJL163C	P46996	555 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	UBC9	P50623	157 aa	Predicted RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	TEL2	P53038	688 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	SGF73	P53165	657 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	CUL3	P53202	744 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	DUS1	P53759	423 aa	Known RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	ORC4	P54791	529 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	RPL6A	Q02326	176 aa	Known RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	ERB1	Q04660	807 aa	Known RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	AIM32	Q04689	311 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	ADE13	Q05911	482 aa	Known RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	ECM22	Q05958	814 aa	Predicted RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	RPN7	Q06103	429 aa	Known RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	YLR456W	Q06199	204 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	NGL1	Q08213	363 aa	Known RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	KEL3	Q08979	651 aa	Predicted RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	HER1	Q12276	1246 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	PFK27	Q12471	397 aa	Predicted RBP	3.22	□□□□□ -1.89
SSN8	YNL025C	YOR019W	Q99248	730 aa		3.22	□□□□□ -1.89
SSN8	YNL025C	YLR302C	O13544	120 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	RPL19A	P0CX82	189 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	RPL19B	P0CX83	189 aa	Predicted RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	PCK1	P10963	549 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	KSS1	P14681	368 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	CLC1	P17891	233 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	CPR2	P23285	205 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	YCR051W	P25631	222 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	PAP1	P29468	568 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	CYS3	P31373	394 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	SUR1	P33300	382 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	SAP190	P36123	1033 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	ERT1	P38140	529 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	FAT1	P38225	669 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	YDR089W	P38966	869 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	PZF1	P39933	429 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	OSW5	P40219	148 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	YIL089W	P40500	205 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	YIR042C	P40586	236 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	GCN20	P43535	752 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	ROK1	P45818	564 aa	Predicted RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	AIP1	P46680	615 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	SIP4	P46954	829 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	PUS2	P53167	370 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	LSB1	P53281	241 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	MRPS35	P53292	345 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	SNF12	P53628	566 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	MTD1	Q02046	320 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	LGE1	Q02796	332 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	EFR3	Q03653	782 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	VBA4	Q04602	768 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	GTB1	Q04924	702 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	COQ11	Q05892	277 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	SPH1	Q06160	661 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	RIM20	Q12033	661 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	SPE3	Q12074	293 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	LYS21	Q12122	440 aa	Known RBP	3.21	□□□□□ -1.9
SSN8	YNL025C	HAL9	Q12180	1030 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	ATG11	Q12527	1178 aa		3.21	□□□□□ -1.9
SSN8	YNL025C	YLR415C	O13578	112 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	YEL076C-A	P0CX16	216 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	YLR464W	P0CX17	216 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	PUT4	P15380	627 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	CDC43	P18898	376 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.2	□□□□□ -1.9	not detected
SSN8	YNL025C	RPL5	P26321	297 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	PHO91	P27514	894 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	MSP1	P28737	362 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	SPC110	P32380	944 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	SRB2	P34162	210 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	UBP11	P36026	717 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	STB6	P36085	766 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	YKR018C	P36114	725 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	PIM1	P36775	1133 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	DED81	P38707	554 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	FSH1	P38777	243 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	SSZ1	P38788	538 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	WSS1	P38838	269 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	YEL076C	P39971	216 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	YER034W	P40022	185 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	IST3	P40565	148 aa	Predicted RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	NOP9	P47077	666 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	YJR039W	P47107	1121 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	YNL247W	P53852	767 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	SSL2	Q00578	843 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	TOF2	Q02208	771 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	ATG21	Q02887	496 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	MUS81	Q04149	632 aa	Predicted RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	TFC6	Q06339	672 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	CRD1	Q07560	283 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	RIX7	Q07844	837 aa	Known RBP	3.2	□□□□□ -1.9
SSN8	YNL025C	SGO1	Q08490	590 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	NUS1	Q12063	375 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	SUT2	Q12286	268 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	GRX6	Q12438	231 aa		3.2	□□□□□ -1.9
SSN8	YNL025C	GAL7	P08431	366 aa		3.19	□□□□□ -1.9
SSN8	YNL025C	CBS1	P14066	229 aa		3.19	□□□□□ -1.9
SSN8	YNL025C	MSS116	P15424	664 aa	Known RBP	3.19	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms