RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 CTTNBP2NLQ9P2B4 639 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 TPX2Q9ULW0 747 aaKnown RBP11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 AGTPBP1Q9UPW5 1226 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 IVNS1ABPQ9Y6Y0 642 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 USP19O94966 1318 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 ERBB4Q15303 1308 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 GPAA1O43292 621 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 PRDM1O75626 825 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 SESN3P58005 492 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 PEX26Q7Z412 305 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 CCDC105Q8IYK2 499 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 ZNF594Q96JF6 807 aaPredicted RBP11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 PLCB1Q9NQ66 1216 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 ZMYND10O75800 440 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 SNCBQ16143 134 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 CACTINQ8WUQ7 758 aaKnown RBP11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 NDUFA8P51970 172 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 SFMBT2Q5VUG0 894 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 MYSM1Q5VVJ2 828 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 NELFCDQ8IXH7 590 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 GBP5Q96PP8 586 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 EIF2AK4Q9P2K8 1649 aaKnown RBP11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 KCNJ18B7U540 433 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 E7EWF7 191 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 RGS16O15492 202 aaPredicted RBP11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 COBLO75128 1261 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 RAD51AP2Q09MP3 1159 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 KCNJ12Q14500 433 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 E2F4Q16254 413 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 PKD2L1Q9P0L9 805 aa11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.33□□□□□ -0.6
GTF3C1-202ENST00000561623 KRT15P19012 456 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 UHMK1Q8TAS1 419 aaKnown RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 LONRF2Q1L5Z9 754 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 SDCCAG8Q86SQ7 713 aaPredicted RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 MAK16Q9BXY0 300 aaKnown RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 MED4Q9NPJ6 270 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 PPP1R2P41236 205 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 SMC1BQ8NDV3 1235 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 IRS4O14654 1257 aaPredicted RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 ENC1O14682 589 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 PARP1P09874 1014 aaKnown RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 ZNF853P0CG23 659 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 E2F5Q15329 346 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 C11orf57Q6ZUT1 292 aaPredicted RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 SUCLG2Q96I99 432 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 TSKSQ9UJT2 592 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 NSFL1CQ9UNZ2 370 aaKnown RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 RPGRIP1Q96KN7 1286 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 CLIC6Q96NY7 704 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 DPH5Q9H2P9 285 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 SAP30BPQ9UHR5 308 aaKnown RBP11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 PCDHA7Q9UN72 937 aa11.32□□□□□ -0.6
GTF3C1-202ENST00000561623 SBNO1A3KN83 1393 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 KIF3CO14782 793 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 CASQ2O14958 399 aaPredicted RBP11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 CHMP2AO43633 222 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 STX2P32856 288 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 KCNK3O14649 394 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 CMTR1Q8N1G2 835 aaKnown RBP11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 CLCN6P51797 869 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 IFT88Q13099 833 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 MORC3Q14149 939 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 VPS54Q9P1Q0 977 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 STK24Q9Y6E0 443 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 PSDA5PKW4 1024 aaPredicted RBP11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 PABPN1LA6NDY0 278 aaKnown RBP11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 RNF40O75150 1001 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 RFC1P35251 1148 aaPredicted RBP11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.31□□□□□ -0.64e-9■■■□□ 16.2
GTF3C1-202ENST00000561623 RABGGTAQ92696 567 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 CCDC51Q96ER9 411 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 XAGE2Q96GT9 111 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 USTQ9Y2C2 406 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 CLIC4Q9Y696 253 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 ZFYVE9O95405 1425 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 GYS2P54840 703 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 HNRNPH2P55795 449 aaKnown RBP11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 OR8K1Q8NGG5 319 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 CCDC87Q9NVE4 849 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 MYO1AQ9UBC5 1043 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 RGS12O14924 1447 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 TRIM58Q8NG06 486 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 GPCPD1Q9NPB8 672 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 HYOU1Q9Y4L1 999 aa11.31□□□□□ -0.6
GTF3C1-202ENST00000561623 A0A0D9SFI3 127 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 CETN3O15182 167 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 SRGAP1Q7Z6B7 1085 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 SLC35F6Q8N357 371 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 TDRD7Q8NHU6 1098 aaKnown RBP11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 TM6SF1Q9BZW5 370 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 FANCAO15360 1455 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 KDM5BQ9UGL1 1544 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 TBC1D8O95759 1140 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 AP1ARQ63HQ0 302 aa11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 ADAT2Q7Z6V5 191 aaKnown RBP11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 ZC3H12CQ9C0D7 883 aaKnown RBP11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 NIP7Q9Y221 180 aaKnown RBP eCLIP11.3□□□□□ -0.6
GTF3C1-202ENST00000561623 SSX2IPQ9Y2D8 614 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms