RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 USP17L18D6R9N7 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L22D6RA61 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L17D6RBQ6 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L19D6RCP7 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L20D6RJB6 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 GH2P01242 217 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 HLA-DOAP06340 250 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 UQCRFS1P1P0C7P4 283 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 PTPREP23469 700 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L24Q0WX57 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 GJC2Q5T442 439 aaPredicted RBP20.49■□□□□ 0.87
CHMP3-203ENST00000409225 ADGRA1Q86SQ6 560 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 TRPV1Q8NER1 839 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 NPLOC4Q8TAT6 608 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 PRDM6Q9NQX0 595 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 PPP4CP60510 307 aa20.48■□□□□ 0.87
CHMP3-203ENST00000409225 IVNS1ABPQ9Y6Y0 642 aa20.48■□□□□ 0.87
CHMP3-203ENST00000409225 CDK5RAP2Q96SN8 1893 aa20.47■□□□□ 0.87
CHMP3-203ENST00000409225 MTX1Q13505 466 aa20.47■□□□□ 0.87
CHMP3-203ENST00000409225 GRB14Q14449 540 aa20.47■□□□□ 0.87
CHMP3-203ENST00000409225 CDCA7LQ96GN5 454 aa20.47■□□□□ 0.87
CHMP3-203ENST00000409225 C12orf42Q96LP6 360 aa20.47■□□□□ 0.87
CHMP3-203ENST00000409225 BTBD7Q9P203 1132 aa20.47■□□□□ 0.87
CHMP3-203ENST00000409225 MYCNP04198 464 aaPredicted RBP20.46■□□□□ 0.87
CHMP3-203ENST00000409225 GNAI3P08754 354 aa20.46■□□□□ 0.87
CHMP3-203ENST00000409225 HOXC6P09630 235 aa20.46■□□□□ 0.87
CHMP3-203ENST00000409225 ATF7IPQ6VMQ6 1270 aa20.46■□□□□ 0.87
CHMP3-203ENST00000409225 SLC39A5Q6ZMH5 540 aa20.46■□□□□ 0.87
CHMP3-203ENST00000409225 CATSPERGQ6ZRH7 1159 aa20.46■□□□□ 0.87
CHMP3-203ENST00000409225 BADQ92934 168 aa20.46■□□□□ 0.87
CHMP3-203ENST00000409225 TTYH1Q9H313 450 aaPredicted RBP20.46■□□□□ 0.87
CHMP3-203ENST00000409225 FOCADQ5VW36 1801 aa20.46■□□□□ 0.87
CHMP3-203ENST00000409225 KBTBD13C9JR72 458 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 CYBAP13498 195 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 FOSL2P15408 326 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 VCAM1P19320 739 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 DYNLL1P63167 89 aaKnown RBP20.45■□□□□ 0.86
CHMP3-203ENST00000409225 G3BP1Q13283 466 aaKnown RBP eCLIP20.45■□□□□ 0.86
CHMP3-203ENST00000409225 RAB3GAP1Q15042 981 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 TTC39AQ5SRH9 613 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 ANO1Q5XXA6 986 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 ARRDC4Q8NCT1 418 aa20.45■□□□□ 0.86
CHMP3-203ENST00000409225 USP14P54578 494 aa20.44■□□□□ 0.86
CHMP3-203ENST00000409225 SMAD3P84022 425 aaKnown RBP20.44■□□□□ 0.86
CHMP3-203ENST00000409225 TRIM60Q495X7 471 aa20.44■□□□□ 0.86
CHMP3-203ENST00000409225 RLFQ13129 1914 aa20.43■□□□□ 0.86
CHMP3-203ENST00000409225 DPP9Q86TI2 863 aa20.43■□□□□ 0.86
CHMP3-203ENST00000409225 ACER1Q8TDN7 264 aa20.43■□□□□ 0.86
CHMP3-203ENST00000409225 PDLIM7Q9NR12 457 aa20.43■□□□□ 0.86
CHMP3-203ENST00000409225 PRUNE2Q8WUY3 3088 aa20.42■□□□□ 0.86
CHMP3-203ENST00000409225 SPDYE16A6NNV3 312 aaPredicted RBP20.42■□□□□ 0.86
CHMP3-203ENST00000409225 CYP2E1P05181 493 aaPredicted RBP20.42■□□□□ 0.86
CHMP3-203ENST00000409225 LBX2Q6XYB7 198 aa20.42■□□□□ 0.86
CHMP3-203ENST00000409225 SH3RF1Q7Z6J0 888 aa20.42■□□□□ 0.86
CHMP3-203ENST00000409225 KIAA1683Q9H0B3 1180 aa20.42■□□□□ 0.86
CHMP3-203ENST00000409225 RPAP3Q9H6T3 665 aaPredicted RBP20.42■□□□□ 0.86
CHMP3-203ENST00000409225 PNMA6EA0A0J9YXQ4 647 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 TRIM43BA6NCK2 446 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 IGHA2P01877 340 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 ADORA2AP29274 412 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 CCDC158Q5M9N0 1113 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 TATDN1Q6P1N9 297 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 SYMPKQ92797 1274 aaKnown RBP20.41■□□□□ 0.86
CHMP3-203ENST00000409225 FERMT2Q96AC1 680 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 TRIM43Q96BQ3 446 aaPredicted RBP20.41■□□□□ 0.86
CHMP3-203ENST00000409225 DBNDD2Q9BQY9 259 aa20.41■□□□□ 0.86
CHMP3-203ENST00000409225 PIH1D3Q9NQM4 214 aaKnown RBP20.41■□□□□ 0.86
CHMP3-203ENST00000409225 CYP7A1P22680 504 aa20.4■□□□□ 0.86
CHMP3-203ENST00000409225 ADCYAP1R1P41586 468 aa20.4■□□□□ 0.86
CHMP3-203ENST00000409225 ZAP70P43403 619 aa20.4■□□□□ 0.86
CHMP3-203ENST00000409225 USP5P45974 858 aa20.4■□□□□ 0.86
CHMP3-203ENST00000409225 SNX17Q15036 470 aa20.4■□□□□ 0.86
CHMP3-203ENST00000409225 ABCB5Q2M3G0 1257 aa20.4■□□□□ 0.86
CHMP3-203ENST00000409225 CERKLQ49MI3 558 aaPredicted RBP20.4■□□□□ 0.86
CHMP3-203ENST00000409225 OLFML2BQ68BL8 750 aa20.4■□□□□ 0.86
CHMP3-203ENST00000409225 MYH1P12882 1939 aa20.39■□□□□ 0.86
CHMP3-203ENST00000409225 MYO5AQ9Y4I1 1855 aaKnown RBP20.39■□□□□ 0.86
CHMP3-203ENST00000409225 SEPT4O43236 478 aa20.39■□□□□ 0.85
CHMP3-203ENST00000409225 CT47B1P0C2W7 299 aaPredicted RBP20.39■□□□□ 0.85
CHMP3-203ENST00000409225 MIGA1Q8NAN2 632 aa20.39■□□□□ 0.85
CHMP3-203ENST00000409225 MOV10L1Q9BXT6 1211 aaKnown RBP20.39■□□□□ 0.85
CHMP3-203ENST00000409225 SERPINB13Q9UIV8 391 aa20.39■□□□□ 0.85
CHMP3-203ENST00000409225 CDH23Q9H251 3354 aa20.39■□□□□ 0.85
CHMP3-203ENST00000409225 GNAI2P04899 355 aa20.38■□□□□ 0.85
CHMP3-203ENST00000409225 LRRC41Q15345 812 aa20.38■□□□□ 0.85
CHMP3-203ENST00000409225 TNNI3KQ59H18 835 aa20.38■□□□□ 0.85
CHMP3-203ENST00000409225 PRAMEF19Q5SWL8 479 aa20.38■□□□□ 0.85
CHMP3-203ENST00000409225 TRMT2AQ8IZ69 625 aaKnown RBP20.38■□□□□ 0.85
CHMP3-203ENST00000409225 RNPC3Q96LT9 517 aaKnown RBP20.38■□□□□ 0.85
CHMP3-203ENST00000409225 CABP5Q9NP86 173 aa20.38■□□□□ 0.85
CHMP3-203ENST00000409225 FPGT-TNNI3KV9GXZ4 949 aa20.38■□□□□ 0.85
CHMP3-203ENST00000409225 COBLO75128 1261 aa20.37■□□□□ 0.85
CHMP3-203ENST00000409225 EHD4Q9H223 541 aa20.37■□□□□ 0.85
CHMP3-203ENST00000409225 TTC28Q96AY4 2481 aa20.37■□□□□ 0.85
CHMP3-203ENST00000409225 STRNO43815 780 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 IDH1O75874 414 aaKnown RBP20.36■□□□□ 0.85
CHMP3-203ENST00000409225 ERCC3P19447 782 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 ITGB8P26012 769 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 TLE2Q04725 743 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 OS9Q13438 667 aaPredicted RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms