RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	SKI8	Q02793	397 aa	Predicted RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	HEL2	Q05580	639 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	NNT1	Q05874	261 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	SUE1	Q06524	206 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	MDM36	Q06820	579 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	TRE1	Q08919	783 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	YLR053C	Q12026	108 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	RKM4	Q12504	494 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	YDR034W-B	Q6Q5X2	51 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	SNF4	P12904	322 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	CMK2	P22517	447 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	CMK1	P27466	446 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	PEX3	P28795	441 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	PTP2	P29461	750 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	CRM1	P30822	1084 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	DOM34	P33309	386 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	GLG1	P36143	616 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	ATP3	P38077	311 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	SDH8	P38345	138 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	MTG2	P38860	518 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	JHD1	P40034	492 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	MSE1	P48525	536 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	FOL2	P51601	243 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	MPS2	P53159	387 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	UTP8	P53276	713 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	BNI5	P53890	448 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	PRO2	P54885	456 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	MYO5	Q04439	1219 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	ADY4	Q05955	493 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	VPS36	Q06696	566 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	NTG2	Q08214	380 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	HER1	Q12276	1246 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	ADF1	Q2V2Q1	113 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
CAF4	YKR036C	DAP2	P18962	818 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	CLN2	P20438	545 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	MAK31	P23059	88 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	PHO84	P25297	587 aa	Known RBP	4.92	□□□□□ -1.62
CAF4	YKR036C	MEI4	P29467	408 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	YSC84	P32793	468 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	TYE7	P33122	291 aa	Predicted RBP	4.92	□□□□□ -1.62
CAF4	YKR036C	YBR225W	P38321	900 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	DYS1	P38791	387 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	YDR089W	P38966	869 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	BIM1	P40013	344 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	YGR210C	P42942	411 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	ALT1	P52893	592 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	HOS2	P53096	452 aa	Predicted RBP	4.92	□□□□□ -1.62
CAF4	YKR036C	COG2	P53271	262 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	ZRG17	P53735	605 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	GCN5	Q03330	439 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	VPS54	Q12071	889 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	FAL1	Q12099	399 aa	Known RBP	4.92	□□□□□ -1.62
CAF4	YKR036C	YBR298C-A	Q8TGK4	73 aa		4.92	□□□□□ -1.62
CAF4	YKR036C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
CAF4	YKR036C	MAS2	P11914	482 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	RED1	P14291	827 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	PRP22	P24384	1145 aa	Known RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	CLB3	P24870	427 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
CAF4	YKR036C	HIS2	P38635	335 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	FTR1	P40088	404 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	FET5	P43561	622 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	NUP84	P52891	726 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	VAC7	P53950	1165 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	NOG1	Q02892	647 aa	Known RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	MSC2	Q03455	724 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	ECM11	Q04110	302 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	YET2	Q04210	160 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	SPC2	Q04969	178 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	DXO1	Q06349	442 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	TCO89	Q08921	799 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	YOR289W	Q12012	251 aa	Predicted RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	MED2	Q12124	431 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	HSP42	Q12329	375 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	SPE4	Q12455	300 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	YEL077C	Q3E7X8	1277 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	URA3	P03962	267 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	VPS33	P20795	691 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	VPS3	P23643	1011 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	PWP2	P25635	923 aa	Known RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	IMP3	P32899	183 aa	Predicted RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	STE5	P32917	917 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	LRG1	P35688	1017 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	MRPL40	P36534	297 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	RDH54	P38086	958 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	FLR1	P38124	548 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	GUA1	P38625	525 aa	Known RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	NDT80	P38830	627 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	YHR131C	P38835	850 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	ALD5	P40047	520 aa	Known RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	YER186C	P40101	306 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	YMR134W	P40207	237 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	INP51	P40559	946 aa	Known RBP	4.91	□□□□□ -1.62
CAF4	YKR036C	ELP2	P42935	788 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	MDV1	P47025	714 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	RSM26	P47141	266 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	DIE2	P50076	525 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	AZR1	P50080	613 aa		4.91	□□□□□ -1.62
CAF4	YKR036C	NAN1	Q02931	896 aa	Known RBP	4.91	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 18.5 ms