RNA–Protein interactions for RNA: YIL076W

SEC28, Transcript of Epsilon-COP subunit of the coatomer, yeast

Gene SEC28, Length 891 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC28	YIL076W	NPA3	P47122	385 aa		4.72	□□□□□ -1.65
SEC28	YIL076W	ICL2	Q12031	575 aa		4.72	□□□□□ -1.65
SEC28	YIL076W	YBR255C-A	Q3E776	120 aa		4.72	□□□□□ -1.65
SEC28	YIL076W	LYS20	P48570	428 aa	Known RBP	4.71	□□□□□ -1.66
SEC28	YIL076W	SND1	Q04007	877 aa		4.71	□□□□□ -1.66
SEC28	YIL076W	MPD2	Q99316	277 aa		4.71	□□□□□ -1.66
SEC28	YIL076W	SEC18	P18759	758 aa	Known RBP	4.7	□□□□□ -1.66
SEC28	YIL076W	PTC6	P25646	442 aa		4.7	□□□□□ -1.66
SEC28	YIL076W	FRD1	P32614	470 aa	Known RBP	4.7	□□□□□ -1.66
SEC28	YIL076W	ATO2	P32907	282 aa		4.7	□□□□□ -1.66
SEC28	YIL076W	NIC96	P34077	839 aa		4.7	□□□□□ -1.66
SEC28	YIL076W	GND1	P38720	489 aa	Known RBP	4.7	□□□□□ -1.66
SEC28	YIL076W	YIR016W	P40572	265 aa		4.7	□□□□□ -1.66
SEC28	YIL076W	MDV1	P47025	714 aa		4.7	□□□□□ -1.66
SEC28	YIL076W	ORC5	P50874	479 aa		4.7	□□□□□ -1.66
SEC28	YIL076W	VTC3	Q02725	835 aa		4.7	□□□□□ -1.66
SEC28	YIL076W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
SEC28	YIL076W	SWC3	P31376	625 aa		4.69	□□□□□ -1.66
SEC28	YIL076W	SCO2	P38072	301 aa		4.69	□□□□□ -1.66
SEC28	YIL076W	TOM71	P38825	639 aa	Known RBP	4.69	□□□□□ -1.66
SEC28	YIL076W	STT3	P39007	718 aa	Known RBP	4.69	□□□□□ -1.66
SEC28	YIL076W	YJL107C	P42947	387 aa		4.69	□□□□□ -1.66
SEC28	YIL076W	YGR079W	P53249	370 aa		4.69	□□□□□ -1.66
SEC28	YIL076W	LSC1	P53598	329 aa	Known RBP	4.69	□□□□□ -1.66
SEC28	YIL076W	SNA4	Q07549	140 aa		4.69	□□□□□ -1.66
SEC28	YIL076W	LEA1	Q08963	238 aa	Predicted RBP	4.69	□□□□□ -1.66
SEC28	YIL076W	YOL114C	Q12322	202 aa		4.69	□□□□□ -1.66
SEC28	YIL076W	RRI1	Q12468	440 aa		4.69	□□□□□ -1.66
SEC28	YIL076W	COX1	P00401	534 aa		4.68	□□□□□ -1.66
SEC28	YIL076W	CNA1	P23287	553 aa		4.68	□□□□□ -1.66
SEC28	YIL076W	LAC1	P28496	418 aa		4.68	□□□□□ -1.66
SEC28	YIL076W	NUP53	Q03790	475 aa		4.68	□□□□□ -1.66
SEC28	YIL076W	THI3	Q07471	609 aa		4.68	□□□□□ -1.66
SEC28	YIL076W	ATX2	Q12067	313 aa		4.68	□□□□□ -1.66
SEC28	YIL076W	SIR1	P21691	654 aa		4.67	□□□□□ -1.66
SEC28	YIL076W	MSS51	P32335	436 aa		4.67	□□□□□ -1.66
SEC28	YIL076W	FUN12	P39730	1002 aa	Known RBP	4.67	□□□□□ -1.66
SEC28	YIL076W	YPT11	P48559	417 aa		4.67	□□□□□ -1.66
SEC28	YIL076W	YPR003C	P53394	754 aa		4.67	□□□□□ -1.66
SEC28	YIL076W	YNL144C	P53907	740 aa		4.67	□□□□□ -1.66
SEC28	YIL076W	ECM22	Q05958	814 aa	Predicted RBP	4.67	□□□□□ -1.66
SEC28	YIL076W	ARN1	P38731	627 aa		4.66	□□□□□ -1.66
SEC28	YIL076W	CAB2	P40506	365 aa		4.66	□□□□□ -1.66
SEC28	YIL076W	PEX8	P53248	589 aa		4.66	□□□□□ -1.66
SEC28	YIL076W	SST2	P11972	698 aa	Known RBP	4.65	□□□□□ -1.67
SEC28	YIL076W	RIT1	P23796	513 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	HES1	P35843	434 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	YIL152W	P40455	235 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	CDC1	P40986	491 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	UBX6	P47049	396 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	YRB30	P53107	440 aa	Predicted RBP	4.65	□□□□□ -1.67
SEC28	YIL076W	TAM41	P53230	385 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	YPL108W	Q02872	168 aa	Predicted RBP	4.65	□□□□□ -1.67
SEC28	YIL076W	SRL1	Q08673	210 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	DSE3	Q08729	430 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	BUD7	Q08754	746 aa		4.65	□□□□□ -1.67
SEC28	YIL076W	TMA7	Q3E764	64 aa	Known RBP	4.65	□□□□□ -1.67
SEC28	YIL076W	SWI4	P25302	1093 aa	Known RBP	4.64	□□□□□ -1.67
SEC28	YIL076W	TEP1	P53916	434 aa		4.64	□□□□□ -1.67
SEC28	YIL076W	BOP3	P53958	396 aa		4.64	□□□□□ -1.67
SEC28	YIL076W	MOT3	P54785	490 aa	Known RBP	4.64	□□□□□ -1.67
SEC28	YIL076W	UBX3	Q12229	455 aa		4.64	□□□□□ -1.67
SEC28	YIL076W	ADE3	P07245	946 aa	Known RBP	4.63	□□□□□ -1.67
SEC28	YIL076W	POL3	P15436	1097 aa		4.63	□□□□□ -1.67
SEC28	YIL076W	APM3	P38153	483 aa		4.63	□□□□□ -1.67
SEC28	YIL076W	YDR109C	Q04585	715 aa		4.63	□□□□□ -1.67
SEC28	YIL076W	PDR8	Q06149	701 aa		4.63	□□□□□ -1.67
SEC28	YIL076W	RVB2	Q12464	471 aa	Known RBP	4.63	□□□□□ -1.67
SEC28	YIL076W	URK1	P27515	501 aa		4.62	□□□□□ -1.67
SEC28	YIL076W	ATG21	Q02887	496 aa		4.62	□□□□□ -1.67
SEC28	YIL076W	GTB1	Q04924	702 aa		4.62	□□□□□ -1.67
SEC28	YIL076W	EIS1	Q05050	843 aa	Known RBP	4.62	□□□□□ -1.67
SEC28	YIL076W	IWR1	Q07532	353 aa	Predicted RBP	4.62	□□□□□ -1.67
SEC28	YIL076W	MLH2	Q07980	695 aa		4.62	□□□□□ -1.67
SEC28	YIL076W	SUL2	Q12325	893 aa		4.62	□□□□□ -1.67
SEC28	YIL076W	MCM3	P24279	971 aa	Known RBP	4.61	□□□□□ -1.67
SEC28	YIL076W	YCR043C	P25361	127 aa		4.61	□□□□□ -1.67
SEC28	YIL076W	OCT1	P35999	772 aa		4.61	□□□□□ -1.67
SEC28	YIL076W	TPA1	P40032	644 aa	Known RBP	4.61	□□□□□ -1.67
SEC28	YIL076W	YMR034C	Q05131	434 aa	Predicted RBP	4.61	□□□□□ -1.67
SEC28	YIL076W	BRE1	Q07457	700 aa	Known RBP	4.61	□□□□□ -1.67
SEC28	YIL076W	RPL42A	P0CX27	106 aa	Known RBP	4.6	□□□□□ -1.67
SEC28	YIL076W	RPL42B	P0CX28	106 aa	Known RBP	4.6	□□□□□ -1.67
SEC28	YIL076W	PET122	P10355	254 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	GCS1	P35197	352 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	YKL133C	P36066	463 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	ARC40	P38328	384 aa	Known RBP	4.6	□□□□□ -1.67
SEC28	YIL076W	QRI7	P43122	407 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	MET14	Q02196	202 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	HIM1	Q06674	414 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	GSH2	Q08220	491 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	MCH4	Q08268	501 aa		4.6	□□□□□ -1.67
SEC28	YIL076W	PIF1	P07271	859 aa		4.59	□□□□□ -1.67
SEC28	YIL076W	ARP2	P32381	391 aa	Known RBP	4.59	□□□□□ -1.67
SEC28	YIL076W	VPS41	P38959	992 aa		4.59	□□□□□ -1.67
SEC28	YIL076W	BUD16	P39988	312 aa		4.59	□□□□□ -1.67
SEC28	YIL076W	TAN1	P53072	289 aa	Predicted RBP	4.59	□□□□□ -1.67
SEC28	YIL076W	YGL036W	P53185	909 aa	Predicted RBP	4.59	□□□□□ -1.67
SEC28	YIL076W	NEW1	Q08972	1196 aa	Known RBP	4.59	□□□□□ -1.67
SEC28	YIL076W	SPC72	P39723	622 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 14 ms