RNA–Protein interactions for RNA: YDL117W

CYK3, Transcript of SH3-domain protein located in the bud neck and cytokinetic actin ring, yeast

Gene CYK3, Length 2,658 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CYK3	YDL117W	HXT2	P23585	541 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	GFD2	P25370	566 aa	Known RBP	5.21	□□□□□ -1.57
CYK3	YDL117W	GCD7	P32502	381 aa	Predicted RBP	5.21	□□□□□ -1.57
CYK3	YDL117W	MRT4	P33201	236 aa	Known RBP	5.21	□□□□□ -1.57
CYK3	YDL117W	TPO5	P36029	618 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	KTR4	P38131	464 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	YBL036C	P38197	257 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	SWP82	P43554	623 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	ROG3	P43602	733 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	MET13	P53128	600 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	KXD1	P53158	218 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	DAM1	P53267	343 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	SOL4	P53315	255 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	IMP4	P53941	290 aa	Known RBP	5.21	□□□□□ -1.57
CYK3	YDL117W	SSL1	Q04673	461 aa	Predicted RBP	5.21	□□□□□ -1.57
CYK3	YDL117W	ECM38	Q05902	660 aa	Predicted RBP	5.21	□□□□□ -1.57
CYK3	YDL117W	DDC1	Q08949	612 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	DOP1	Q03921	1698 aa		5.21	□□□□□ -1.57
CYK3	YDL117W	YSP2	Q06681	1438 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	SEM1	O94742	89 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	RPP1A	P05318	106 aa	Predicted RBP	5.21	□□□□□ -1.58
CYK3	YDL117W	NSP1	P14907	823 aa	Known RBP	5.21	□□□□□ -1.58
CYK3	YDL117W	SEC62	P21825	274 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	RIT1	P23796	513 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	GUT1	P32190	709 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	GUT2	P32191	649 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	TIF11	P38912	153 aa	Known RBP	5.21	□□□□□ -1.58
CYK3	YDL117W	TMA108	P40462	946 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	ASG1	P40467	964 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	SLM1	P40485	686 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	PRP24	P49960	444 aa	Known RBP	5.21	□□□□□ -1.58
CYK3	YDL117W	NUT1	P53114	1132 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	YGR125W	P53273	1036 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	SSY1	Q03770	852 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	UTP5	Q04177	643 aa	Known RBP	5.21	□□□□□ -1.58
CYK3	YDL117W	VTH1	P40438	1549 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	VTH2	P40890	1549 aa		5.21	□□□□□ -1.58
CYK3	YDL117W	COX6	P00427	148 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	PHO5	P00635	467 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	SCEI	P03882	235 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	DBP1	P24784	617 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	LYP1	P32487	611 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	SEN34	P39707	275 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ERG10	P41338	398 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	GLG2	P47011	380 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ENT3	P47160	408 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	SEH1	P53011	349 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	NCS6	P53088	359 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	APP1	P53933	587 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	RPL6A	Q02326	176 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	BSC2	Q05611	235 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ISR1	Q06098	443 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	KAP95	Q06142	861 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	TRE1	Q08919	783 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	RIB2	Q12362	591 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	FUN26	P31381	517 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	HMX1	P32339	317 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	VAM7	P32912	316 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	RCR1	P38212	213 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	YHL017W	P38745	532 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	NEM1	P38757	446 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	RSC30	P38781	883 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	VPS45	P38932	577 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	PZF1	P39933	429 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	YRB2	P40517	327 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ARF3	P40994	183 aa	RIP-Chip data	5.2	□□□□□ -1.58	not detected
CYK3	YDL117W	RCF2	P53721	224 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ELP3	Q02908	557 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	NHP10	Q03435	203 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	MRX10	Q05648	414 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	SNA4	Q07549	140 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
CYK3	YDL117W	SKI7	Q08491	747 aa	Predicted RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	TMA46	Q12000	345 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	AKR2	Q12013	749 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	MED1	Q12321	566 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	NSI1	Q12457	570 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	PDR12	Q02785	1511 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	RPL25	P04456	142 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	PMA1	P05030	918 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	CHS1	P08004	1131 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	MIS1	P09440	975 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	LPD1	P09624	499 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	STF2	P16965	84 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	CLN2	P20438	545 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ATG22	P25568	528 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	VPS17	P32913	551 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ELF1	P36053	145 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	YHR112C	P38716	378 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	LRP1	P38801	184 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	ORC6	P38826	435 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	PIG2	P40187	538 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	NIT1	P40447	199 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	INP51	P40559	946 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	MND2	P40577	368 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	DUG1	P43616	481 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	DLD2	P46681	530 aa	Known RBP	5.2	□□□□□ -1.58
CYK3	YDL117W	PIP2	P52960	996 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	ROM1	P53046	1155 aa		5.2	□□□□□ -1.58
CYK3	YDL117W	MND1	P53102	219 aa		5.2	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms