RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 TEX11Q8IYF3 940 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 TRIB2Q92519 343 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 CDCA7LQ96GN5 454 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 NUDT12Q9BQG2 462 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 TMOD4Q9NZQ9 345 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 HMG20BQ9P0W2 317 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 LRP2BPQ9P2M1 347 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 PI4KBQ9UBF8 816 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 COL2A1P02458 1487 aaPredicted RBP9.63□□□□□ -0.87
CLK1-215ENST00000621181 ASNSP08243 561 aa9.62□□□□□ -0.87
CLK1-215ENST00000621181 GNAI3P08754 354 aa9.62□□□□□ -0.87
CLK1-215ENST00000621181 MAGEA10P43363 369 aaPredicted RBP9.62□□□□□ -0.87
CLK1-215ENST00000621181 PDE3AQ14432 1141 aa9.62□□□□□ -0.87
CLK1-215ENST00000621181 SH3D19Q5HYK7 790 aa9.62□□□□□ -0.87
CLK1-215ENST00000621181 TDHQ8IZJ6 230 aa9.62□□□□□ -0.87
CLK1-215ENST00000621181 SOCS4Q8WXH5 440 aa9.62□□□□□ -0.87
CLK1-215ENST00000621181 TRIM34Q9BYJ4 488 aa9.62□□□□□ -0.87
CLK1-215ENST00000621181 DHX36Q9H2U1 1008 aaKnown RBP9.62□□□□□ -0.87
CLK1-215ENST00000621181 RBM19Q9Y4C8 960 aaKnown RBP9.62□□□□□ -0.87
CLK1-215ENST00000621181 DDX60LQ5H9U9 1706 aaKnown RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 CT47B1P0C2W7 299 aaPredicted RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 BACE1P56817 501 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 RRP1BQ14684 758 aaKnown RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 LRIT3Q3SXY7 679 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 Q7L0L9 218 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 CRACR2BQ8N4Y2 399 aaPredicted RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 GPRC5AQ8NFJ5 357 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 UBE2OQ9C0C9 1292 aaKnown RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 MORF4L1Q9UBU8 362 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 OGDHLQ9ULD0 1010 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 EYSQ5T1H1 3165 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 BAG3O95817 575 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 XRCC5P13010 732 aaKnown RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 PLCG2P16885 1265 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 ZKSCAN1P17029 563 aaPredicted RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 ARID4AP29374 1257 aaPredicted RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 MCAMP43121 646 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 MNX1P50219 401 aaPredicted RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 HERVK_113P62684 666 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 SH3RF3Q8TEJ3 882 aaPredicted RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 P2RX7Q99572 595 aaKnown RBP9.61□□□□□ -0.87
CLK1-215ENST00000621181 WDR18Q9BV38 432 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 TXNRD2Q9NNW7 524 aa9.61□□□□□ -0.87
CLK1-215ENST00000621181 AATFQ9NY61 560 aaKnown RBP eCLIP9.61□□□□□ -0.87
CLK1-215ENST00000621181 PFASO15067 1338 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 C19orf81C9J6K1 198 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 USP17L10C9JJH3 530 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 PEX10O60683 326 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 MAPK4P31152 587 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 HOXA7P31268 230 aaPredicted RBP9.6□□□□□ -0.87
CLK1-215ENST00000621181 MTX1Q13505 466 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 MAP3K21Q5TCX8 1036 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 NAA16Q6N069 864 aaPredicted RBP9.6□□□□□ -0.87
CLK1-215ENST00000621181 TRMT44Q8IYL2 757 aaKnown RBP9.6□□□□□ -0.87
CLK1-215ENST00000621181 TGFBRAP1Q8WUH2 860 aa9.6□□□□□ -0.87
CLK1-215ENST00000621181 CWC22Q9HCG8 908 aaKnown RBP9.6□□□□□ -0.87
CLK1-215ENST00000621181 GDF11O95390 407 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 UQCRFS1P1P0C7P4 283 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 VASPP50552 380 aaPredicted RBP9.59□□□□□ -0.87
CLK1-215ENST00000621181 ERVK-9P63128 1117 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 ERVK-24P63145 666 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 G3BP1Q13283 466 aaKnown RBP eCLIP9.59□□□□□ -0.87
CLK1-215ENST00000621181 MAPKAPK5Q8IW41 473 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 PAGR1Q9BTK6 254 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 STXBP5LQ9Y2K9 1186 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 PLXNB2O15031 1838 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 VCANP13611 3396 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 FLT1P17948 1338 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 PRUNE2Q8WUY3 3088 aa9.59□□□□□ -0.87
CLK1-215ENST00000621181 RGS2P41220 211 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 CACNB2Q08289 660 aaPredicted RBP9.59□□□□□ -0.88
CLK1-215ENST00000621181 GPR142Q7Z601 462 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 PLCD3Q8N3E9 789 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 GTF3C2Q8WUA4 911 aaPredicted RBP9.59□□□□□ -0.88
CLK1-215ENST00000621181 APBA2Q99767 749 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 PORCNQ9H237 461 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 DNAJC18Q9H819 358 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 SNRKQ9NRH2 765 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 PALD1Q9ULE6 856 aa9.59□□□□□ -0.88
CLK1-215ENST00000621181 HLA-DOAP06340 250 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 MDM2Q00987 491 aaPredicted RBP9.58□□□□□ -0.88
CLK1-215ENST00000621181 CCL14Q16627 93 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 SHROOM1Q2M3G4 852 aaPredicted RBP9.58□□□□□ -0.88
CLK1-215ENST00000621181 TTC39AQ5SRH9 613 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 WDR78Q5VTH9 848 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 ATF7IPQ6VMQ6 1270 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 FOXP4Q8IVH2 680 aaPredicted RBP9.58□□□□□ -0.88
CLK1-215ENST00000621181 TRMT2AQ8IZ69 625 aaKnown RBP9.58□□□□□ -0.88
CLK1-215ENST00000621181 ARHGAP45Q92619 1136 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 FEZ1Q99689 392 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 MTMR10Q9NXD2 777 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 PPP4R2Q9NY27 417 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 RBPJLQ9UBG7 517 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 ZBTB21Q9ULJ3 1066 aa9.58□□□□□ -0.88
CLK1-215ENST00000621181 SIPA1L1O43166 1804 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 GNAI2P04899 355 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 CCND3P30281 292 aaPredicted RBP9.57□□□□□ -0.88
CLK1-215ENST00000621181 RARSP54136 660 aaKnown RBP9.57□□□□□ -0.88
CLK1-215ENST00000621181 IRX6P78412 446 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms