RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Celsr2Q9R0M0 2920 aa12.16□□□□□ -0.46
Ctcf-201ENSMUST00000005841 Xirp2Q4U4S6 3784 aa12.16□□□□□ -0.46
Ctcf-201ENSMUST00000005841 Gm20730A0A075B5J6 119 aa12.16□□□□□ -0.46
Ctcf-201ENSMUST00000005841 1700010B08RikQ9DAI7 102 aa12.16□□□□□ -0.46
Ctcf-201ENSMUST00000005841 Smim10l1A0A087WNQ7 89 aa12.16□□□□□ -0.46
Ctcf-201ENSMUST00000005841 Gm17455G3UW87 128 aa12.15□□□□□ -0.46
Ctcf-201ENSMUST00000005841 BlcapP62951 87 aa12.15□□□□□ -0.46
Ctcf-201ENSMUST00000005841 CubnQ9JLB4 3623 aa12.15□□□□□ -0.46
Ctcf-201ENSMUST00000005841 Lelp1Q9DAE3 120 aa12.15□□□□□ -0.46
Ctcf-201ENSMUST00000005841 Dido1Q8C9B9 2256 aaKnown RBP12.14□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Ndufa3Q9CQ91 84 aa12.14□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Ly6hQ9WUC3 139 aa12.14□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Cela2aP05208 271 aa12.14□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Trav13d-1A0A075B606 110 aa12.14□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Usmg5Q78IK2 58 aa12.14□□□□□ -0.47
Ctcf-201ENSMUST00000005841 AY761184Q9D848 116 aa12.14□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Helz2E9QAM5 2947 aaKnown RBP12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 AngP21570 145 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 PlaurP35456 327 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Trav14d-3-dv8A0A075B619 120 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Tm2d2Q8R0I4 213 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 3110018I06RikQ9CXS0 120 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Piezo1E2JF22 2547 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Cox17P56394 63 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Spag11Q8K4N2 71 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Cox6cQ9CPQ1 76 aa12.13□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Ncor1Q60974 2453 aa12.12□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Trdv5A0A075B661 115 aa12.12□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Vmo1Q5SXG7 201 aa12.12□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Rnf183Q8QZS5 190 aa12.12□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Klk11Q9QYN3 276 aa12.11□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Tfpi2O35536 230 aa12.11□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Atp5g1Q9CR84 136 aa12.11□□□□□ -0.47
Ctcf-201ENSMUST00000005841 HampQ9EQ21 83 aa12.11□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Gm9925F6T2U3 160 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 7530416G11RikJ3QJX6 159 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Tcf15Q60756 195 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Cacna1hO88427 2365 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 A930009A15RikG3UYI6 118 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 P01823 113 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Gm10577Q3UDV9 132 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Gm29666A0A087WQ99 126 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Gm10549Q3URY4 149 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Qrich2A0A140LIY9 2337 aa12.1□□□□□ -0.47
Ctcf-201ENSMUST00000005841 1810032O08RikE9PZV8 113 aa12.09□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Pglyrp4Q0VB07 374 aa12.09□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Shisa2Q8QZV2 295 aa12.09□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Ighv2-7A0A075B5Q8 116 aa12.08□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Prelid3aQ8VE85 172 aa12.08□□□□□ -0.47
Ctcf-201ENSMUST00000005841 Cox6b1P56391 86 aaKnown RBP12.08□□□□□ -0.48
Ctcf-201ENSMUST00000005841 SpinklQ8CEK3 90 aa12.08□□□□□ -0.48
Ctcf-201ENSMUST00000005841 BsnO88737 3942 aa12.08□□□□□ -0.48
Ctcf-201ENSMUST00000005841 5730596B20RikQ8BQ08 205 aa12.07□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Prss58Q8BW11 241 aa12.07□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Cystm1Q8K353 104 aa12.07□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Gm10553J3QPF1 123 aa12.07□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Fxyd5P97808 178 aa12.07□□□□□ -0.48
Ctcf-201ENSMUST00000005841 CdsnQ7TPC1 561 aa12.06□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Pla2g2cP48076 150 aa12.06□□□□□ -0.48
Ctcf-201ENSMUST00000005841 A830031A19RikQ8BNT5 113 aa12.06□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Ighv1-62-1A0A075B5U3 116 aa12.05□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Rps28P62858 69 aaKnown RBP12.05□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Ntn5Q3UQ22 452 aa12.05□□□□□ -0.48
Ctcf-201ENSMUST00000005841 CrebbpP45481 2441 aa12.05□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Rpl28P41105 137 aaKnown RBP12.04□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Ighv2-9-1A0A075B697 116 aa12.04□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Trav9-2A0A075B647 113 aa12.03□□□□□ -0.48
Ctcf-201ENSMUST00000005841 Trav9-4A0A0B4J1K2 113 aa12.03□□□□□ -0.48
Ctcf-201ENSMUST00000005841 CrygdP04342 174 aa12.03□□□□□ -0.48
Ctcf-201ENSMUST00000005841 1700011M02RikB1AX35 88 aa12.02□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Synj2bpQ9D6K5 145 aa12.02□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Igkv4-91A0A075B5L2 119 aa12.01□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Fhl2O70433 279 aa12.01□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Trav11A0A0B4J1J9 114 aa12.01□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Ank2Q8C8R3 3898 aa12.01□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Snrpd3P62320 126 aaKnown RBP12.01□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Defb50Q6TU36 73 aa12.01□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Ighv8-11A0A075B5X4 119 aa12□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Ighv5-9-1A0A0A6YVS4 126 aa12□□□□□ -0.49
Ctcf-201ENSMUST00000005841 4930524J08RikQ9CUJ5 163 aa12□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Igkv4-79A0A075B5L8 119 aa12□□□□□ -0.49
Ctcf-201ENSMUST00000005841 1810062G17RikG3X8Y2 129 aa12□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Ang3P97802 145 aa11.99□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Gm3618D3Z4P5 127 aa11.99□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Gm2916Q9D9B9 127 aa11.99□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Ubtd1Q91WB7 227 aa11.98□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Hspg2Q05793 3707 aaKnown RBP11.98□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Plac8l1Q08EJ0 177 aa11.98□□□□□ -0.49
Ctcf-201ENSMUST00000005841 PemtQ61907 199 aa11.98□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Phpt1Q9DAK9 124 aa11.97□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Igf1P05017 153 aa11.97□□□□□ -0.49
Ctcf-201ENSMUST00000005841 4930518I15RikQ3V2W7 57 aa11.97□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Lce6aD3YV94 81 aa11.97□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Gm10300Q8C8P7 189 aa11.97□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Abca4O35600 2310 aa11.97□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Lst1O08843 95 aa11.96□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Avpi1Q9D7H4 142 aa11.96□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Itpr3P70227 2670 aa11.96□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Trav13n-1A0A0G2JEU8 110 aa11.96□□□□□ -0.49
Ctcf-201ENSMUST00000005841 Igkv1-117A0A140T8M0 119 aa11.95□□□□□ -0.5
Retrieved 100 of 22,080 RNA–protein pairs in 50.1 ms