RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	MRE11	P32829	692 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	REC104	P33323	182 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	MCD4	P36051	919 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	YKL023W	P36103	277 aa	Known RBP	4.59	□□□□□ -1.67
CDC42	YLR229C	CCT2	P39076	527 aa	Known RBP	4.59	□□□□□ -1.67
CDC42	YLR229C	HMF1	P40037	129 aa	Known RBP	4.59	□□□□□ -1.67
CDC42	YLR229C	YFL054C	P43549	646 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	NET1	P47035	1189 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	CTR1	P49573	406 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	HSV2	P50079	448 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC42	YLR229C	YGR021W	P53212	290 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	MDR1	P53258	950 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	ESBP6	P53918	673 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	RPL22B	P56628	122 aa	Known RBP	4.59	□□□□□ -1.67
CDC42	YLR229C	TIM8	P57744	87 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	URH1	Q04179	340 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	HFD1	Q04458	532 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	FAR8	Q05040	523 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	DON1	Q05610	365 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	SIL1	Q08199	421 aa		4.59	□□□□□ -1.67
CDC42	YLR229C	GPN2	Q08726	347 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC42	YLR229C	FKS1	P38631	1876 aa	Known RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	ARG4	P04076	463 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	GCD1	P09032	578 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	PRP4	P20053	465 aa	Known RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	TKL1	P23254	680 aa	Known RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	TOA1	P32773	286 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	COT1	P32798	439 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	YKR078W	P36158	585 aa	Known RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	TVP38	P36164	337 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	REG2	P38232	338 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	ERC1	P38767	581 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	SPC72	P39723	622 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	GVP36	P40531	326 aa	Known RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	SAP185	P40856	1058 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	TMA22	P47089	198 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	KAP114	P53067	1004 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	JJJ1	P53863	590 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	SUB1	P54000	292 aa	Known RBP	4.58	□□□□□ -1.68
CDC42	YLR229C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
CDC42	YLR229C	TFB2	Q02939	513 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	ERV41	Q04651	352 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	GTB1	Q04924	702 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	ECI1	Q05871	280 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	SMC5	Q08204	1093 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	NCA2	Q12374	616 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	ERP3	Q12403	225 aa		4.58	□□□□□ -1.68
CDC42	YLR229C	TRP3	P00937	484 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	SNF1	P06782	633 aa	Known RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	ERR1	P0CX10	437 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	ERR2	P0CX11	437 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	ERG11	P10614	530 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	MSD1	P15179	658 aa	Known RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	PWP1	P21304	576 aa	Known RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
CDC42	YLR229C	FUN30	P31380	1131 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	SIN4	P32259	974 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	SFP1	P32432	683 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	MUD1	P32605	298 aa	Known RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	STE13	P33894	931 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	MAC1	P35192	417 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	BLI1	P35727	113 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	OMA1	P36163	345 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	RCK2	P38623	610 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	YEL025C	P39991	1188 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	YER158C	P40095	573 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	INA22	P40576	216 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	SEC27	P41811	889 aa	Known RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	UBP6	P43593	499 aa	Known RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	TAM41	P53230	385 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	CPR6	P53691	371 aa	Known RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	ASI1	P54074	624 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	SDH1	Q00711	640 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	SLD5	Q03406	294 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	INP2	Q03824	705 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	YMR018W	Q04364	514 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	PIG1	Q06216	648 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	CFT2	Q12102	859 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC42	YLR229C	HIF1	Q12373	385 aa		4.57	□□□□□ -1.68
CDC42	YLR229C	NAT1	P12945	854 aa	Known RBP	4.56	□□□□□ -1.68
CDC42	YLR229C	POL3	P15436	1097 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	SPO16	P17122	198 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	SRV2	P17555	526 aa	Known RBP	4.56	□□□□□ -1.68
CDC42	YLR229C	RFA1	P22336	621 aa	Known RBP	4.56	□□□□□ -1.68
CDC42	YLR229C	SEC21	P32074	935 aa	Known RBP	4.56	□□□□□ -1.68
CDC42	YLR229C	RPC82	P32349	654 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	PUP2	P32379	260 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	EUG1	P32474	517 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	YKL050C	P35736	922 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	SPC42	P36094	363 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	BET3	P36149	193 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	TRZ1	P36159	838 aa	Predicted RBP	4.56	□□□□□ -1.68
CDC42	YLR229C	MNN1	P39106	762 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	YIL089W	P40500	205 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	GCN20	P43535	752 aa	Known RBP	4.56	□□□□□ -1.68
CDC42	YLR229C	AVT1	P47082	602 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	YJR142W	P47173	342 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	BRO1	P48582	844 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	RTT102	P53330	157 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	DSL1	P53847	754 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms