RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C TY2A-BQ12260 438 aa2.53□□□□□ -2
UBP11YKR098C TY2A-OR2Q12293 438 aa2.53□□□□□ -2
UBP11YKR098C TY2A-DR1Q12392 438 aa2.53□□□□□ -2
UBP11YKR098C TY2A-OR1Q12439 438 aa2.53□□□□□ -2
UBP11YKR098C TY2A-DR3Q99303 438 aa2.53□□□□□ -2
UBP11YKR098C CTS1P29029 562 aa2.52□□□□□ -2.01
UBP11YKR098C ESL2P36168 1195 aa2.52□□□□□ -2.01
UBP11YKR098C GEX2P36173 615 aa2.52□□□□□ -2.01
UBP11YKR098C JNM1P36224 373 aa2.52□□□□□ -2.01
UBP11YKR098C APL3P38065 1025 aa2.52□□□□□ -2.01
UBP11YKR098C SUL1P38359 859 aa2.52□□□□□ -2.01
UBP11YKR098C KSP1P38691 1029 aaKnown RBP2.52□□□□□ -2.01
UBP11YKR098C FMP10P40098 244 aa2.52□□□□□ -2.01
UBP11YKR098C IST3P40565 148 aaPredicted RBP2.52□□□□□ -2.01
UBP11YKR098C NMA2P53204 395 aa2.52□□□□□ -2.01
UBP11YKR098C BSC5P53755 489 aa2.52□□□□□ -2.01
UBP11YKR098C RIA1P53893 1110 aa2.52□□□□□ -2.01
UBP11YKR098C UFO1Q04511 668 aa2.52□□□□□ -2.01
UBP11YKR098C STP3Q05937 343 aa2.52□□□□□ -2.01
UBP11YKR098C YOL073CQ08232 322 aa2.52□□□□□ -2.01
UBP11YKR098C RKI1Q12189 258 aa2.52□□□□□ -2.01
UBP11YKR098C PNO1Q99216 274 aaKnown RBP2.52□□□□□ -2.01
UBP11YKR098C ATP2P00830 511 aaKnown RBP2.51□□□□□ -2.01
UBP11YKR098C RPB2P08518 1224 aaKnown RBP2.51□□□□□ -2.01
UBP11YKR098C URK1P27515 501 aa2.51□□□□□ -2.01
UBP11YKR098C SWC3P31376 625 aa2.51□□□□□ -2.01
UBP11YKR098C MRP20P32387 263 aa2.51□□□□□ -2.01
UBP11YKR098C NUP120P35729 1037 aa2.51□□□□□ -2.01
UBP11YKR098C PSD1P39006 500 aa2.51□□□□□ -2.01
UBP11YKR098C YJR061WP40355 935 aa2.51□□□□□ -2.01
UBP11YKR098C LYS14P40971 790 aa2.51□□□□□ -2.01
UBP11YKR098C SKP2P42843 763 aa2.51□□□□□ -2.01
UBP11YKR098C BUD17P53727 317 aa2.51□□□□□ -2.01
UBP11YKR098C ATG4P53867 494 aa2.51□□□□□ -2.01
UBP11YKR098C DAK1P54838 584 aaKnown RBP2.51□□□□□ -2.01
UBP11YKR098C SSL2Q00578 843 aa2.51□□□□□ -2.01
UBP11YKR098C MFM1Q02783 413 aa2.51□□□□□ -2.01
UBP11YKR098C TDA9Q04545 1251 aa2.51□□□□□ -2.01
UBP11YKR098C RVB2Q12464 471 aaKnown RBP2.51□□□□□ -2.01
UBP11YKR098C FOB1O13329 566 aa2.51□□□□□ -2.01
UBP11YKR098C YLR302CO13544 120 aa2.51□□□□□ -2.01
UBP11YKR098C RPL19AP0CX82 189 aaKnown RBP2.51□□□□□ -2.01
UBP11YKR098C RPL19BP0CX83 189 aaPredicted RBP2.51□□□□□ -2.01
UBP11YKR098C MRP7P12687 371 aa2.51□□□□□ -2.01
UBP11YKR098C STE4P18851 423 aa2.51□□□□□ -2.01
UBP11YKR098C CNE1P27825 502 aa2.51□□□□□ -2.01
UBP11YKR098C PMI40P29952 429 aaKnown RBP2.51□□□□□ -2.01
UBP11YKR098C CDC5P32562 705 aa2.51□□□□□ -2.01
UBP11YKR098C NFU1P32860 256 aa2.51□□□□□ -2.01
UBP11YKR098C CCL1P37366 393 aa2.51□□□□□ -2.01
UBP11YKR098C YPT10P38146 199 aa2.51□□□□□ -2.01
UBP11YKR098C ARO9P38840 513 aaPredicted RBP2.51□□□□□ -2.01
UBP11YKR098C YIP4P53093 235 aa2.51□□□□□ -2.01
UBP11YKR098C SMX3P54999 86 aaPredicted RBP2.51□□□□□ -2.01
UBP11YKR098C KIN4Q01919 800 aa2.51□□□□□ -2.01
UBP11YKR098C MTG1Q03151 367 aaPredicted RBP2.51□□□□□ -2.01
UBP11YKR098C RCO1Q04779 684 aa2.51□□□□□ -2.01
UBP11YKR098C TMA16Q08687 178 aa2.51□□□□□ -2.01
UBP11YKR098C LAM4P38800 1345 aa2.5□□□□□ -2.01
UBP11YKR098C TUB2P02557 457 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C ERG8P24521 451 aa2.5□□□□□ -2.01
UBP11YKR098C GCD7P32502 381 aaPredicted RBP2.5□□□□□ -2.01
UBP11YKR098C THI6P41835 540 aa2.5□□□□□ -2.01
UBP11YKR098C ASE1P50275 885 aa2.5□□□□□ -2.01
UBP11YKR098C VPS4P52917 437 aa2.5□□□□□ -2.01
UBP11YKR098C IMO32P53219 342 aa2.5□□□□□ -2.01
UBP11YKR098C RBG2P53295 368 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C ARE2P53629 642 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C REG1Q00816 1014 aa2.5□□□□□ -2.01
UBP11YKR098C YPL216WQ08964 1102 aa2.5□□□□□ -2.01
UBP11YKR098C BMS1Q08965 1183 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C NBP2Q12163 236 aa2.5□□□□□ -2.01
UBP11YKR098C PRS5Q12265 496 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C SKM1Q12469 655 aa2.5□□□□□ -2.01
UBP11YKR098C YBR255C-AQ3E776 120 aa2.5□□□□□ -2.01
UBP11YKR098C VCX1Q99385 411 aa2.5□□□□□ -2.01
UBP11YKR098C CMK1P27466 446 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C SAC6P32599 642 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C PCL5P38794 229 aa2.5□□□□□ -2.01
UBP11YKR098C YJL206CP39529 758 aa2.5□□□□□ -2.01
UBP11YKR098C ARC1P46672 376 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C TIM10P87108 93 aa2.5□□□□□ -2.01
UBP11YKR098C YSA1Q01976 231 aa2.5□□□□□ -2.01
UBP11YKR098C VIP1Q06685 1146 aaKnown RBP2.5□□□□□ -2.01
UBP11YKR098C MRN1Q08925 612 aaKnown RBP RIP-Chip data2.5□□□□□ -2.01not detected
UBP11YKR098C SUI3P09064 285 aaKnown RBP2.49□□□□□ -2.01
UBP11YKR098C CDC24P11433 854 aaPredicted RBP2.49□□□□□ -2.01
UBP11YKR098C SPO16P17122 198 aa2.49□□□□□ -2.01
UBP11YKR098C KGD2P19262 463 aaPredicted RBP2.49□□□□□ -2.01
UBP11YKR098C OLE1P21147 510 aaKnown RBP2.49□□□□□ -2.01
UBP11YKR098C SGF29P25554 259 aa2.49□□□□□ -2.01
UBP11YKR098C LRE1P25579 583 aaKnown RBP2.49□□□□□ -2.01
UBP11YKR098C LOT5P34234 306 aa2.49□□□□□ -2.01
UBP11YKR098C NOP4P37838 685 aaKnown RBP2.49□□□□□ -2.01
UBP11YKR098C TDP1P38319 544 aa2.49□□□□□ -2.01
UBP11YKR098C YBR225WP38321 900 aa2.49□□□□□ -2.01
UBP11YKR098C YHL017WP38745 532 aa2.49□□□□□ -2.01
UBP11YKR098C ARG2P40360 574 aa2.49□□□□□ -2.01
UBP11YKR098C NDC80P40460 691 aa2.49□□□□□ -2.01
UBP11YKR098C PMT6P42934 759 aa2.49□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 52.8 ms