RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 SPP2Q13103 211 aa19.35■□□□□ 0.69
PDLIM3-213ENST00000629667 PABPC4Q13310 644 aaKnown RBP eCLIP19.35■□□□□ 0.69
PDLIM3-213ENST00000629667 ZNF280CQ8ND82 737 aa19.35■□□□□ 0.69
PDLIM3-213ENST00000629667 API5Q9BZZ5 524 aaKnown RBP19.35■□□□□ 0.69
PDLIM3-213ENST00000629667 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.35■□□□□ 0.69
PDLIM3-213ENST00000629667 STAP2Q9UGK3 403 aa19.35■□□□□ 0.69
PDLIM3-213ENST00000629667 NPM3O75607 178 aaKnown RBP19.34■□□□□ 0.69
PDLIM3-213ENST00000629667 LDHCP07864 332 aa19.34■□□□□ 0.69
PDLIM3-213ENST00000629667 CDCA7LQ96GN5 454 aa19.34■□□□□ 0.69
PDLIM3-213ENST00000629667 MEIS3Q99687 375 aa19.34■□□□□ 0.69
PDLIM3-213ENST00000629667 TBC1D2Q9BYX2 928 aa19.34■□□□□ 0.69
PDLIM3-213ENST00000629667 HMGCRP04035 888 aa19.33■□□□□ 0.68
PDLIM3-213ENST00000629667 GSTO1P78417 241 aa19.33■□□□□ 0.68
PDLIM3-213ENST00000629667 TFCP2Q12800 502 aa19.33■□□□□ 0.68
PDLIM3-213ENST00000629667 SLC17A8Q8NDX2 589 aa19.33■□□□□ 0.68
PDLIM3-213ENST00000629667 NEUROD6Q96NK8 337 aa19.33■□□□□ 0.68
PDLIM3-213ENST00000629667 LAMA3Q16787 3333 aa19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 SRGAP3O43295 1099 aa19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 MAP4K4O95819 1239 aaPredicted RBP19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 HMGCS2P54868 508 aa19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 GORABQ5T7V8 394 aa19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 ANKLE1Q8NAG6 615 aa19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 DIS3LQ8TF46 1054 aaKnown RBP19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 ZNF384Q8TF68 577 aa19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 HMX1Q9NP08 348 aaPredicted RBP19.32■□□□□ 0.68
PDLIM3-213ENST00000629667 COL2A1P02458 1487 aaPredicted RBP19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 USP17L5A8MUK1 530 aa19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 SOX1O00570 391 aaPredicted RBP19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 CT47B1P0C2W7 299 aaPredicted RBP19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 CAP2P40123 477 aa19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 SPATA5Q8NB90 893 aa19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 NSUN4Q96CB9 384 aaKnown RBP19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 LRCH3Q96II8 777 aa19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 ASCC2Q9H1I8 757 aaPredicted RBP19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 AS3MTQ9HBK9 375 aa19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 RAI14Q9P0K7 980 aa19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 HMG20BQ9P0W2 317 aa19.31■□□□□ 0.68
PDLIM3-213ENST00000629667 RPTORQ8N122 1335 aa19.3■□□□□ 0.68
PDLIM3-213ENST00000629667 TBC1D9Q6ZT07 1266 aa19.3■□□□□ 0.68
PDLIM3-213ENST00000629667 C7orf61Q8IZ16 206 aa19.3■□□□□ 0.68
PDLIM3-213ENST00000629667 COL6A3P12111 3177 aa19.3■□□□□ 0.68
PDLIM3-213ENST00000629667 DDX60LQ5H9U9 1706 aaKnown RBP19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 GNAI3P08754 354 aa19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 SH3D19Q5HYK7 790 aa19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 PI16Q6UXB8 463 aa19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 TEX11Q8IYF3 940 aa19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 NBPF3Q9H094 633 aa19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 HERC5Q9UII4 1024 aaKnown RBP19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 GJD2Q9UKL4 321 aa19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 PLXNB2O15031 1838 aa19.29■□□□□ 0.68
PDLIM3-213ENST00000629667 DLL1O00548 723 aa19.28■□□□□ 0.68
PDLIM3-213ENST00000629667 RRP1BQ14684 758 aaKnown RBP19.28■□□□□ 0.68
PDLIM3-213ENST00000629667 TRMT2AQ8IZ69 625 aaKnown RBP19.28■□□□□ 0.68
PDLIM3-213ENST00000629667 NOL10Q9BSC4 688 aaKnown RBP19.28■□□□□ 0.68
PDLIM3-213ENST00000629667 LRP2BPQ9P2M1 347 aa19.28■□□□□ 0.68
PDLIM3-213ENST00000629667 ZMYND8Q9ULU4 1186 aaPredicted RBP19.28■□□□□ 0.68
PDLIM3-213ENST00000629667 BMP8BP34820 402 aa19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 IRX3P78415 501 aaPredicted RBP19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 TRIM32Q13049 653 aa19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 MTX1Q13505 466 aa19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 GDF15Q99988 308 aa19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 TMOD4Q9NZQ9 345 aa19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 PI4KBQ9UBF8 816 aa19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 MORF4L1Q9UBU8 362 aa19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.27■□□□□ 0.68
PDLIM3-213ENST00000629667 CYP2B6P20813 491 aa19.26■□□□□ 0.67
PDLIM3-213ENST00000629667 ARID4AP29374 1257 aaPredicted RBP19.26■□□□□ 0.67
PDLIM3-213ENST00000629667 MTMR2Q13614 643 aa19.26■□□□□ 0.67
PDLIM3-213ENST00000629667 DHX36Q9H2U1 1008 aaKnown RBP19.26■□□□□ 0.67
PDLIM3-213ENST00000629667 C11orf49Q9H6J7 331 aa19.26■□□□□ 0.67
PDLIM3-213ENST00000629667 SIPA1L1O43166 1804 aa19.25■□□□□ 0.67
PDLIM3-213ENST00000629667 ASNSP08243 561 aa19.25■□□□□ 0.67
PDLIM3-213ENST00000629667 BACE1P56817 501 aa19.25■□□□□ 0.67
PDLIM3-213ENST00000629667 SH3RF3Q8TEJ3 882 aaPredicted RBP19.25■□□□□ 0.67
PDLIM3-213ENST00000629667 TRIB2Q92519 343 aa19.25■□□□□ 0.67
PDLIM3-213ENST00000629667 NUDT12Q9BQG2 462 aa19.25■□□□□ 0.67
PDLIM3-213ENST00000629667 WDR18Q9BV38 432 aa19.25■□□□□ 0.67
PDLIM3-213ENST00000629667 CDK5RAP2Q96SN8 1893 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 BAG3O95817 575 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 UQCRFS1P1P0C7P4 283 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 SYN1P17600 705 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 MCAMP43121 646 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 G3BP1Q13283 466 aaKnown RBP eCLIP19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 ARHGAP45Q92619 1136 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 P2RX7Q99572 595 aaKnown RBP19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 TRIM34Q9BYJ4 488 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 AATFQ9NY61 560 aaKnown RBP eCLIP19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 OGDHLQ9ULD0 1010 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 MAST2Q6P0Q8 1798 aa19.24■□□□□ 0.67
PDLIM3-213ENST00000629667 FOCADQ5VW36 1801 aa19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 PRKAR2AP13861 404 aaKnown RBP19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 PLCG2P16885 1265 aa19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 HOXA7P31268 230 aaPredicted RBP19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 MNX1P50219 401 aaPredicted RBP19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 NAA16Q6N069 864 aaPredicted RBP19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 GPR153Q6NV75 609 aa19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 CCAR1Q8IX12 1150 aaKnown RBP19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 CRACR2BQ8N4Y2 399 aaPredicted RBP19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 GPRC5AQ8NFJ5 357 aa19.23■□□□□ 0.67
PDLIM3-213ENST00000629667 SOCS4Q8WXH5 440 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms