RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 CALM1P0DP23 149 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 CALM2P0DP24 149 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 CALM3P0DP25 149 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 IFNAR1P17181 557 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 U2AF2P26368 475 aaKnown RBP eCLIP9.64□□□□□ -0.872e-10■■■■■ 39.7
SPG11-209ENST00000558253 IARSP41252 1262 aaKnown RBP9.64□□□□□ -0.87
SPG11-209ENST00000558253 TPM4P67936 248 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 CHRNDQ07001 517 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 SSRP1Q08945 709 aaKnown RBP9.64□□□□□ -0.87
SPG11-209ENST00000558253 ITPK1Q13572 414 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 SNW1Q13573 536 aaKnown RBP9.64□□□□□ -0.87
SPG11-209ENST00000558253 CAMK4Q16566 473 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 MYSM1Q5VVJ2 828 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 ANO1Q5XXA6 986 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 CEP57L1Q8IYX8 460 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 FMR1NBQ8N0W7 255 aaPredicted RBP9.64□□□□□ -0.87
SPG11-209ENST00000558253 FSIP1Q8NA03 581 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 ZMYND15Q9H091 742 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 CBX8Q9HC52 389 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.64□□□□□ -0.87
SPG11-209ENST00000558253 LRP2BPQ9P2M1 347 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 HOOK1Q9UJC3 728 aaKnown RBP9.64□□□□□ -0.87
SPG11-209ENST00000558253 DOT1LQ8TEK3 1739 aa9.64□□□□□ -0.87
SPG11-209ENST00000558253 MYH7P12883 1935 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 FAM237AA0A1B0GTK4 181 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 SMTNL1A8MU46 457 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 GSG1L2A8MUP6 293 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 IFIT3O14879 490 aaKnown RBP9.63□□□□□ -0.87
SPG11-209ENST00000558253 MBD4O95243 580 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 ADAMTS2O95450 1211 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 FMNL1O95466 1100 aaPredicted RBP9.63□□□□□ -0.87
SPG11-209ENST00000558253 XBP1P17861 261 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 TDO2P48775 406 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 FOSBP53539 338 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 KIF23Q02241 960 aaPredicted RBP9.63□□□□□ -0.87
SPG11-209ENST00000558253 NOLC1Q14978 699 aaKnown RBP eCLIP9.63□□□□□ -0.87
SPG11-209ENST00000558253 SLC39A14Q15043 492 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 PI16Q6UXB8 463 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 CHST3Q7LGC8 479 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 MTERF4Q7Z6M4 381 aaKnown RBP9.63□□□□□ -0.87
SPG11-209ENST00000558253 CERS3Q8IU89 383 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 TBC1D10CQ8IV04 446 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 ESR2Q92731 530 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 CCDC34Q96HJ3 373 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 MRFAP1L1Q96HT8 127 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 SDF4Q9BRK5 362 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 ALG1Q9BT22 464 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 BRIP1Q9BX63 1249 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 NBPF3Q9H094 633 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 PDCL3Q9H2J4 239 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 LY9Q9HBG7 655 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 WWC3Q9ULE0 1092 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 PCDHA7Q9UN72 937 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 CEP131Q9UPN4 1083 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 SLC4A4Q9Y6R1 1079 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 LTBP4Q8N2S1 1624 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 LAMA4Q16363 1823 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 LAMB2P55268 1798 aa9.63□□□□□ -0.87
SPG11-209ENST00000558253 AKAP11Q9UKA4 1901 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 A0A0G2JLW4 131 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 MAGEB6P1A0A0J9YX57 407 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 GOLGA8AA7E2F4 631 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 BECN2A8MW95 431 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 B4E1Z4 1266 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 CUTAO60888 179 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 RPS6KA4O75676 772 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 SLC3A2P08195 630 aaKnown RBP9.62□□□□□ -0.87
SPG11-209ENST00000558253 ZNF75DP51815 510 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 GNL2Q13823 731 aaKnown RBP9.62□□□□□ -0.87
SPG11-209ENST00000558253 WTAPQ15007 396 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 SPTY2D1Q68D10 685 aaPredicted RBP9.62□□□□□ -0.87
SPG11-209ENST00000558253 CYB5R4Q7L1T6 521 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 PLA2G4DQ86XP0 818 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 CKAP2LQ8IYA6 745 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 NLRP3Q96P20 1036 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 TRIM5Q9C035 493 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 FOXP1Q9H334 677 aaPredicted RBP9.62□□□□□ -0.87
SPG11-209ENST00000558253 ZSWIM5Q9P217 1185 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 NARFQ9UHQ1 456 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 PHLPP1O60346 1717 aa9.62□□□□□ -0.87
SPG11-209ENST00000558253 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.62□□□□□ -0.87
SPG11-209ENST00000558253 BCL9LQ86UU0 1499 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 DYNC1I1O14576 645 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 DEXIO95424 95 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 BMP15O95972 392 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 FGRP09769 529 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 CYP7A1P22680 504 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 GTF2E1P29083 439 aaPredicted RBP9.61□□□□□ -0.87
SPG11-209ENST00000558253 BCAMP50895 628 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 CHAF1AQ13111 956 aaPredicted RBP9.61□□□□□ -0.87
SPG11-209ENST00000558253 IQCB1Q15051 598 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 NTRK3Q16288 839 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 RTN1Q16799 776 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 CCDC178Q5BJE1 867 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 RILPL1Q5EBL4 403 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 PPP4R3BQ5MIZ7 849 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 KRT40Q6A162 431 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 TPTE2Q6XPS3 522 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 FBXO33Q7Z6M2 555 aa9.61□□□□□ -0.87
SPG11-209ENST00000558253 VPS37DQ86XT2 251 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms