RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ERLIN1O75477 346 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 ALOX15P16050 662 aaPredicted RBP10.05□□□□□ -0.8
VPS13D-212ENST00000543766 NMIQ13287 307 aaPredicted RBP10.05□□□□□ -0.8
VPS13D-212ENST00000543766 TSGA10IPQ3SY00 556 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 PARP10Q53GL7 1025 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 RASSF8Q8NHQ8 419 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 SH3KBP1Q96B97 665 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 HOOK1Q9UJC3 728 aaKnown RBP10.05□□□□□ -0.8
VPS13D-212ENST00000543766 LZTS1Q9Y250 596 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 SPO11Q9Y5K1 396 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 IQGAP1P46940 1657 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 GBP2P32456 591 aaPredicted RBP10.05□□□□□ -0.8
VPS13D-212ENST00000543766 GALNT17Q6IS24 598 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 FAM76AQ8TAV0 307 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 FAM81AQ8TBF8 368 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 ZCWPW1Q9H0M4 648 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 CHST12Q9NRB3 414 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 CTNNA3Q9UI47 895 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 COL4A3BPQ9Y5P4 624 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 EIF3CLB5ME19 914 aaKnown RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 CD2BP2O95400 341 aaKnown RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 SLC4A1P02730 911 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 CNGA1P29973 690 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 TPM4P67936 248 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 FAPQ12884 760 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 LRSAM1Q6UWE0 723 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 PROSER2Q86WR7 435 aaPredicted RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 EIF3CQ99613 913 aaKnown RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 CARD11Q9BXL7 1154 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 PTPRTO14522 1441 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 LMTK2Q8IWU2 1503 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 STMND1H3BQB6 276 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 M0R2C6 588 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 TMOD1P28289 359 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 TBC1D10BQ4KMP7 808 aaPredicted RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 EFCAB2Q5VUJ9 269 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 CEP57Q86XR8 500 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 SMARCC1Q92922 1105 aaPredicted RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 TMEM87BQ96K49 555 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 MIS18AQ9NYP9 233 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 MRPL42Q9Y6G3 142 aaKnown RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 IFT172Q9UG01 1749 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 AKR1B10O60218 316 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 VIL1P09327 827 aaKnown RBP10.04□□□□□ -0.8
VPS13D-212ENST00000543766 RASSF7Q02833 373 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 MTHFD1LQ6UB35 978 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 CKAP2LQ8IYA6 745 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 DISP3Q9P2K9 1392 aa10.04□□□□□ -0.8
VPS13D-212ENST00000543766 ZC3H6P61129 1189 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 NFX1Q12986 1120 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 THEMIS2Q5TEJ8 643 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 ATP6V1E2Q96A05 226 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 SENP7Q9BQF6 1050 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 SYNCQ9H7C4 482 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 BZW2Q9Y6E2 419 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 FANCAO15360 1455 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 FIBPO43427 364 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 EIF4A2Q14240 407 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 RPAP2Q8IXW5 612 aaPredicted RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 GPT2Q8TD30 523 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 CLMNQ96JQ2 1002 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 SCAF11Q99590 1463 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 PARD6BQ9BYG5 372 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 DISC1Q9NRI5 854 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 hCG_1642624A0A1W2PR95 340 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 PRC1O43663 620 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 TMEM127O75204 238 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 EIF2S2P20042 333 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 ARPC4P59998 168 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 AIMP1Q12904 312 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 LRP8Q14114 963 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 TTLL12Q14166 644 aaPredicted RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 CPLX2Q6PUV4 134 aaKnown RBP10.03□□□□□ -0.8
VPS13D-212ENST00000543766 MAP3K14Q99558 947 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 IFT57Q9NWB7 429 aa10.03□□□□□ -0.8
VPS13D-212ENST00000543766 IQSEC2Q5JU85 1478 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 GOLGA6L10A0A0M3HER8 536 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 KIF3BO15066 747 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 RCAN1P53805 252 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 PDE4BQ07343 736 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 STK3Q13188 491 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 RBM20Q5T481 1227 aaKnown RBP10.02□□□□□ -0.8
VPS13D-212ENST00000543766 NUTM1Q86Y26 1132 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 C17orf53Q8N3J3 647 aaPredicted RBP10.02□□□□□ -0.8
VPS13D-212ENST00000543766 PANK1Q8TE04 598 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 TESK2Q96S53 571 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.02□□□□□ -0.8
VPS13D-212ENST00000543766 SLC5A4Q9NY91 659 aa10.02□□□□□ -0.8
VPS13D-212ENST00000543766 GPR162Q16538 588 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 TSHZ3Q63HK5 1081 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 CFAP65Q6ZU64 1925 aaKnown RBP10.02□□□□□ -0.81
VPS13D-212ENST00000543766 TRAPPC10P48553 1259 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 RAB27AP51159 221 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 ARHGAP22Q7Z5H3 698 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 NOP9Q86U38 636 aaKnown RBP10.02□□□□□ -0.81
VPS13D-212ENST00000543766 TRIM50Q86XT4 487 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 ASIC4Q96FT7 647 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 FNBP1Q96RU3 617 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 YIPF3Q9GZM5 350 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms