RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 KANK3Q6NY19 840 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 ZNF579Q8NAF0 562 aaKnown RBP8.33□□□□□ -1.08
USP48-206ENST00000464577 RAPGEF4Q8WZA2 1011 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 CCDC51Q96ER9 411 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 TMEM87BQ96K49 555 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 AIFM3Q96NN9 605 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 DESI2Q9BSY9 194 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 L1RE1Q9UN81 338 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 AKAP2Q9Y2D5 859 aa8.33□□□□□ -1.08
USP48-206ENST00000464577 RRP15Q9Y3B9 282 aaKnown RBP8.33□□□□□ -1.08
USP48-206ENST00000464577 MYH7P12883 1935 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 PKD1L3Q7Z443 1732 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 SEMA3EO15041 775 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 TATP17735 454 aaPredicted RBP8.32□□□□□ -1.08
USP48-206ENST00000464577 PTPREP23469 700 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 PBX1P40424 430 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 NTRK3Q16288 839 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 PTPN21Q16825 1174 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 WHAMMP3Q1A5X7 153 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 ESCO1Q5FWF5 840 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 APOA5Q6Q788 366 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 RASGRP2Q7LDG7 609 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 RAB11FIP4Q86YS3 637 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 HOMEZQ8IX15 550 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 IFNL2Q8IZJ0 200 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 STK11IPQ8N1F8 1099 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 SPATA20Q8TB22 786 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 FAM71BQ8TC56 605 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 WASF1Q92558 559 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 DCAF5Q96JK2 942 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 NBPF3Q9H094 633 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 PDE11AQ9HCR9 933 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 CEP126Q9P2H0 1117 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 FBXO2Q9UK22 296 aaPredicted RBP8.32□□□□□ -1.08
USP48-206ENST00000464577 AXIN2Q9Y2T1 843 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 LRP6O75581 1613 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 FER1L4A9Z1Z3 1794 aa8.32□□□□□ -1.08
USP48-206ENST00000464577 FOXN1O15353 648 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 GPAA1O43292 621 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 IARSP41252 1262 aaKnown RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 FKBP4Q02790 459 aaKnown RBP eCLIP8.31□□□□□ -1.08
USP48-206ENST00000464577 NOM1Q5C9Z4 860 aaKnown RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 RAD9BQ6WBX8 426 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 APTXQ7Z2E3 356 aaKnown RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 SGMS1Q86VZ5 419 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 PPFIBP1Q86W92 1011 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 NOSTRINQ8IVI9 506 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 PNKPQ96T60 521 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 TEX13AQ9BXU3 409 aaPredicted RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 PUS7LQ9H0K6 701 aaKnown RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 ACBD3Q9H3P7 528 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 VPS18Q9P253 973 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 MYO1AQ9UBC5 1043 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 MKRN1Q9UHC7 482 aaKnown RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 TTF2Q9UNY4 1162 aaKnown RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 ITIH6Q6UXX5 1313 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 UBN2Q6ZU65 1347 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 MEGF6O75095 1541 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 CTAGE9A4FU28 777 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 SOWAHDA6NJG2 315 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 ZBTB43O43298 467 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 ACTN4O43707 911 aaKnown RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 MFAP3LO75121 409 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 FMNL1O95466 1100 aaPredicted RBP8.31□□□□□ -1.08
USP48-206ENST00000464577 PRR29P0C7W0 189 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 GYS2P54840 703 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 PIP4K2BP78356 416 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 PDE4CQ08493 712 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 MTF1Q14872 753 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 SPATA1Q5VX52 437 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 CYB5R4Q7L1T6 521 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 GOLGA6L1Q8N7Z2 621 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 XAGE2Q96GT9 111 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 MED15Q96RN5 788 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 CTAGE1Q96RT6 745 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.31□□□□□ -1.081e-8■■■□□ 14.7
USP48-206ENST00000464577 MED4Q9NPJ6 270 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 RSPH14Q9UHP6 348 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 SERTAD1Q9UHV2 236 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 LCMT1Q9UIC8 334 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 RGPD5Q99666 1765 aa8.31□□□□□ -1.08
USP48-206ENST00000464577 TIAM2Q8IVF5 1701 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 BCL9LQ86UU0 1499 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 GOLGA8AA7E2F4 631 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 RANBP6O60518 1105 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 GABBR2O75899 941 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 TNNT3P45378 269 aaPredicted RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 NOP2P46087 812 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 PIP4K2AP48426 406 aaPredicted RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 MCM6Q14566 821 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 RILPL1Q5EBL4 403 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 CDKAL1Q5VV42 579 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 TBC1D10CQ8IV04 446 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 CNGA4Q8IV77 575 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 C10orf67Q8IYJ2 551 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 TRMT44Q8IYL2 757 aaKnown RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 IGSF22Q8N9C0 903 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 PHKBQ93100 1093 aa8.3□□□□□ -1.08
USP48-206ENST00000464577 FOXP1Q9H334 677 aaPredicted RBP8.3□□□□□ -1.08
USP48-206ENST00000464577 VIPAS39Q9H9C1 493 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms