RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 LCE1DQ5T752 114 aa6.17□□□□□ -1.42
PNKP-230ENST00000638016 TMEM258P61165 79 aa6.13□□□□□ -1.43
PNKP-230ENST00000638016 MT4P47944 62 aa6.12□□□□□ -1.43
PNKP-230ENST00000638016 KRTAP4-7Q9BYR0 210 aa6.1□□□□□ -1.43
PNKP-230ENST00000638016 UQCR11O14957 56 aa6.08□□□□□ -1.44
PNKP-230ENST00000638016 LCE4AQ5TA78 99 aa6.08□□□□□ -1.44
PNKP-230ENST00000638016 HMCN1Q96RW7 5635 aa6.07□□□□□ -1.44
PNKP-230ENST00000638016 KRTAP12-3P60328 96 aa6.05□□□□□ -1.44
PNKP-230ENST00000638016 KRTAP5-4Q6L8H1 288 aa6.01□□□□□ -1.45
PNKP-230ENST00000638016 MIR22HGQ0VDD5 57 aa5.97□□□□□ -1.45
PNKP-230ENST00000638016 KRTAP4-6Q9BYQ5 205 aa5.95□□□□□ -1.46
PNKP-230ENST00000638016 AHNAK2Q8IVF2 5795 aa5.89□□□□□ -1.47
PNKP-230ENST00000638016 PSPHP1O15172 72 aa5.89□□□□□ -1.47
PNKP-230ENST00000638016 KRTAP25-1Q3LHN0 102 aa5.87□□□□□ -1.47
PNKP-230ENST00000638016 K7ERS5 55 aa5.78□□□□□ -1.48
PNKP-230ENST00000638016 KRTAP5-5Q701N2 237 aaPredicted RBP5.78□□□□□ -1.48
PNKP-230ENST00000638016 LOC100996750A0A140TA64 210 aa5.77□□□□□ -1.49
PNKP-230ENST00000638016 Q1T7F1 81 aa5.77□□□□□ -1.49
PNKP-230ENST00000638016 V9GYY9 64 aa5.74□□□□□ -1.49
PNKP-230ENST00000638016 KRTAP5-10Q6L8G5 202 aa5.73□□□□□ -1.49
PNKP-230ENST00000638016 KRTAP20-2Q3LI61 65 aa5.69□□□□□ -1.5
PNKP-230ENST00000638016 SYNE1Q8NF91 8797 aaKnown RBP5.69□□□□□ -1.5
PNKP-230ENST00000638016 A6NED7 52 aa5.63□□□□□ -1.51
PNKP-230ENST00000638016 KRTAP15-1Q3LI76 137 aa5.63□□□□□ -1.51
PNKP-230ENST00000638016 KRTAP23-1A1A580 65 aa5.6□□□□□ -1.51
PNKP-230ENST00000638016 KRTAP5-3Q6L8H2 238 aa5.6□□□□□ -1.51
PNKP-230ENST00000638016 SPRR5A0A1B0GTR4 108 aa5.58□□□□□ -1.52
PNKP-230ENST00000638016 LCE3CQ5T5A8 94 aa5.57□□□□□ -1.52
PNKP-230ENST00000638016 KRTAP12-4P60329 112 aa5.56□□□□□ -1.52
PNKP-230ENST00000638016 KRTAP19-4Q3LI73 84 aa5.53□□□□□ -1.52
PNKP-230ENST00000638016 CDC42SE1Q9NRR8 79 aa5.52□□□□□ -1.53
PNKP-230ENST00000638016 KRTAP5-7Q6L8G8 165 aa5.48□□□□□ -1.53
PNKP-230ENST00000638016 ROMO1P60602 79 aa5.45□□□□□ -1.54
PNKP-230ENST00000638016 KRTAP6-1Q3LI64 71 aa5.38□□□□□ -1.55
PNKP-230ENST00000638016 RPS28P62857 69 aaKnown RBP5.36□□□□□ -1.55
PNKP-230ENST00000638016 KRTAP9-6A8MVA2 160 aa5.35□□□□□ -1.55
PNKP-230ENST00000638016 MT1AP04731 61 aa5.35□□□□□ -1.55
PNKP-230ENST00000638016 PCP4P48539 62 aa5.3□□□□□ -1.56
PNKP-230ENST00000638016 KRTAP5-2Q701N4 177 aa5.26□□□□□ -1.57
PNKP-230ENST00000638016 KRTAP4-11Q9BYQ6 195 aa5.19□□□□□ -1.58
PNKP-230ENST00000638016 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
PNKP-230ENST00000638016 KRTAP6-2Q3LI66 62 aa5.13□□□□□ -1.59
PNKP-230ENST00000638016 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
PNKP-230ENST00000638016 KRTAP5-8O75690 187 aa5.04□□□□□ -1.6
PNKP-230ENST00000638016 MT3P25713 68 aa4.86□□□□□ -1.63
PNKP-230ENST00000638016 MUC5BQ9HC84 5762 aaPredicted RBP4.82□□□□□ -1.64
PNKP-230ENST00000638016 AHNAKQ09666 5890 aaKnown RBP4.81□□□□□ -1.64
PNKP-230ENST00000638016 MUC5ACP98088 5654 aa4.8□□□□□ -1.64
PNKP-230ENST00000638016 BRK1Q8WUW1 75 aa4.77□□□□□ -1.65
PNKP-230ENST00000638016 KRTAP5-1Q6L8H4 278 aa4.74□□□□□ -1.65
PNKP-230ENST00000638016 KRTAP9-9Q9BYP9 154 aa4.72□□□□□ -1.65
PNKP-230ENST00000638016 LCE1EQ5T753 118 aa4.44□□□□□ -1.7
PNKP-230ENST00000638016 PMAIP1Q13794 54 aa4.43□□□□□ -1.7
PNKP-230ENST00000638016 PRAC1Q96KF2 57 aa4.42□□□□□ -1.7
PNKP-230ENST00000638016 KRTAP4-2Q9BYR5 136 aa4.3□□□□□ -1.72
PNKP-230ENST00000638016 LCE1BQ5T7P3 118 aa4.28□□□□□ -1.72
PNKP-230ENST00000638016 LCE1CQ5T751 118 aa4.14□□□□□ -1.75
PNKP-230ENST00000638016 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
PNKP-230ENST00000638016 PRO0628Q9UI54 55 aa3.98□□□□□ -1.77
PNKP-230ENST00000638016 KRTAP4-12Q9BQ66 201 aa3.95□□□□□ -1.78
PNKP-230ENST00000638016 KTN1-AS1Q86SY8 53 aa3.86□□□□□ -1.79
PNKP-230ENST00000638016 KRTAP5-11Q6L8G4 156 aa3.77□□□□□ -1.81
PNKP-230ENST00000638016 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
PNKP-230ENST00000638016 SVIPQ8NHG7 77 aa3.77□□□□□ -1.81
PNKP-230ENST00000638016 LCE3EQ5T5B0 92 aa3.74□□□□□ -1.81
PNKP-230ENST00000638016 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
PNKP-230ENST00000638016 LUZP6Q538Z0 58 aa3.58□□□□□ -1.84
PNKP-230ENST00000638016 KRTAP21-2Q3LI59 83 aa3.52□□□□□ -1.85
PNKP-230ENST00000638016 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
PNKP-230ENST00000638016 KRTAP4-4Q9BYR3 166 aa3.31□□□□□ -1.88
PNKP-230ENST00000638016 MUC19Q7Z5P9 8384 aa3.14□□□□□ -1.91
PNKP-230ENST00000638016 NDUFAF8A1L188 74 aa2.84□□□□□ -1.95
PNKP-230ENST00000638016 PRM1P04553 51 aa2.84□□□□□ -1.95
PNKP-230ENST00000638016 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
PNKP-230ENST00000638016 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
PNKP-230ENST00000638016 INE1O15225 51 aa2.13□□□□□ -2.07
PNKP-230ENST00000638016 A0A0A0MQY5 61 aa2.02□□□□□ -2.09
PNKP-230ENST00000638016 H3BS24 57 aa0.49□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 5.3 ms