RNA–Protein interactions for RNA: ENST00000601357.6

SSBP4-209, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 606 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-209ENST00000601357 LINC01558Q9Y6Z2 57 aa8□□□□□ -1.13
SSBP4-209ENST00000601357 LCE1DQ5T752 114 aa7.94□□□□□ -1.14
SSBP4-209ENST00000601357 LCE4AQ5TA78 99 aa7.89□□□□□ -1.15
SSBP4-209ENST00000601357 RPS28P62857 69 aaKnown RBP7.88□□□□□ -1.15
SSBP4-209ENST00000601357 KRTAP4-3Q9BYR4 195 aa7.87□□□□□ -1.15
SSBP4-209ENST00000601357 HMCN1Q96RW7 5635 aa7.85□□□□□ -1.15
SSBP4-209ENST00000601357 UQCR11O14957 56 aa7.81□□□□□ -1.16
SSBP4-209ENST00000601357 V9GYY9 64 aa7.81□□□□□ -1.16
SSBP4-209ENST00000601357 MT4P47944 62 aa7.8□□□□□ -1.16
SSBP4-209ENST00000601357 KRTAP5-4Q6L8H1 288 aa7.78□□□□□ -1.16
SSBP4-209ENST00000601357 KRTAP12-3P60328 96 aa7.71□□□□□ -1.18
SSBP4-209ENST00000601357 Q1T7F1 81 aa7.69□□□□□ -1.18
SSBP4-209ENST00000601357 KRTAP4-7Q9BYR0 210 aa7.66□□□□□ -1.18
SSBP4-209ENST00000601357 PSPHP1O15172 72 aa7.65□□□□□ -1.18
SSBP4-209ENST00000601357 MIR22HGQ0VDD5 57 aa7.65□□□□□ -1.18
SSBP4-209ENST00000601357 KRTAP4-6Q9BYQ5 205 aa7.6□□□□□ -1.19
SSBP4-209ENST00000601357 AHNAK2Q8IVF2 5795 aa7.58□□□□□ -1.2
SSBP4-209ENST00000601357 K7ERS5 55 aa7.54□□□□□ -1.2
SSBP4-209ENST00000601357 KRTAP25-1Q3LHN0 102 aa7.51□□□□□ -1.21
SSBP4-209ENST00000601357 A6NED7 52 aa7.46□□□□□ -1.22
SSBP4-209ENST00000601357 KRTAP5-10Q6L8G5 202 aa7.44□□□□□ -1.22
SSBP4-209ENST00000601357 KRTAP5-5Q701N2 237 aaPredicted RBP7.43□□□□□ -1.22
SSBP4-209ENST00000601357 KRTAP20-2Q3LI61 65 aa7.32□□□□□ -1.24
SSBP4-209ENST00000601357 KRTAP19-4Q3LI73 84 aa7.29□□□□□ -1.24
SSBP4-209ENST00000601357 SPRR5A0A1B0GTR4 108 aa7.28□□□□□ -1.24
SSBP4-209ENST00000601357 LOC100996750A0A140TA64 210 aa7.26□□□□□ -1.25
SSBP4-209ENST00000601357 KRTAP23-1A1A580 65 aa7.25□□□□□ -1.25
SSBP4-209ENST00000601357 KRTAP5-3Q6L8H2 238 aa7.23□□□□□ -1.25
SSBP4-209ENST00000601357 KRTAP12-4P60329 112 aa7.2□□□□□ -1.26
SSBP4-209ENST00000601357 KRTAP15-1Q3LI76 137 aa7.17□□□□□ -1.26
SSBP4-209ENST00000601357 KRTAP5-7Q6L8G8 165 aa7.16□□□□□ -1.26
SSBP4-209ENST00000601357 CDC42SE1Q9NRR8 79 aa7.14□□□□□ -1.27
SSBP4-209ENST00000601357 LCE3CQ5T5A8 94 aa7.1□□□□□ -1.27
SSBP4-209ENST00000601357 SYNE1Q8NF91 8797 aaKnown RBP7.09□□□□□ -1.27
SSBP4-209ENST00000601357 BRK1Q8WUW1 75 aa7.01□□□□□ -1.29
SSBP4-209ENST00000601357 ROMO1P60602 79 aa7□□□□□ -1.29
SSBP4-209ENST00000601357 PRO0628Q9UI54 55 aa6.9□□□□□ -1.3
SSBP4-209ENST00000601357 MT1AP04731 61 aa6.85□□□□□ -1.31
SSBP4-209ENST00000601357 KRTAP6-1Q3LI64 71 aa6.82□□□□□ -1.32
SSBP4-209ENST00000601357 KRTAP5-2Q701N4 177 aa6.81□□□□□ -1.32
SSBP4-209ENST00000601357 KRTAP9-6A8MVA2 160 aa6.74□□□□□ -1.33
SSBP4-209ENST00000601357 KRTAP4-11Q9BYQ6 195 aa6.7□□□□□ -1.34
SSBP4-209ENST00000601357 PMAIP1Q13794 54 aa6.69□□□□□ -1.34
SSBP4-209ENST00000601357 KRTAP9-4Q9BYQ2 154 aa6.64□□□□□ -1.35
SSBP4-209ENST00000601357 KRTAP6-2Q3LI66 62 aa6.54□□□□□ -1.36
SSBP4-209ENST00000601357 KRTAP5-8O75690 187 aa6.5□□□□□ -1.37
SSBP4-209ENST00000601357 OBSCNQ5VST9 7968 aa6.43□□□□□ -1.38
SSBP4-209ENST00000601357 KTN1-AS1Q86SY8 53 aa6.39□□□□□ -1.39
SSBP4-209ENST00000601357 MUC5ACP98088 5654 aa6.27□□□□□ -1.41
SSBP4-209ENST00000601357 MT3P25713 68 aa6.26□□□□□ -1.41
SSBP4-209ENST00000601357 MUC5BQ9HC84 5762 aaPredicted RBP6.24□□□□□ -1.41
SSBP4-209ENST00000601357 AHNAKQ09666 5890 aaKnown RBP6.23□□□□□ -1.41
SSBP4-209ENST00000601357 SVIPQ8NHG7 77 aa6.15□□□□□ -1.42
SSBP4-209ENST00000601357 KRTAP9-9Q9BYP9 154 aa6.13□□□□□ -1.43
SSBP4-209ENST00000601357 KRTAP5-1Q6L8H4 278 aa6.11□□□□□ -1.43
SSBP4-209ENST00000601357 PRAC1Q96KF2 57 aa6.07□□□□□ -1.44
SSBP4-209ENST00000601357 LCE1EQ5T753 118 aa5.81□□□□□ -1.48
SSBP4-209ENST00000601357 KRTAP4-2Q9BYR5 136 aa5.5□□□□□ -1.53
SSBP4-209ENST00000601357 LCE1BQ5T7P3 118 aa5.42□□□□□ -1.54
SSBP4-209ENST00000601357 LCE1CQ5T751 118 aa5.4□□□□□ -1.54
SSBP4-209ENST00000601357 LUZP6Q538Z0 58 aa5.28□□□□□ -1.56
SSBP4-209ENST00000601357 LCE3DQ9BYE3 92 aa5.08□□□□□ -1.6
SSBP4-209ENST00000601357 KRTAP4-12Q9BQ66 201 aa4.98□□□□□ -1.61
SSBP4-209ENST00000601357 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.92□□□□□ -1.62
SSBP4-209ENST00000601357 KRTAP5-11Q6L8G4 156 aa4.9□□□□□ -1.63
SSBP4-209ENST00000601357 NDUFAF8A1L188 74 aa4.89□□□□□ -1.63
SSBP4-209ENST00000601357 LCE1FQ5T754 118 aa4.78□□□□□ -1.64
SSBP4-209ENST00000601357 LCE3EQ5T5B0 92 aa4.75□□□□□ -1.65
SSBP4-209ENST00000601357 KRTAP21-2Q3LI59 83 aa4.52□□□□□ -1.69
SSBP4-209ENST00000601357 A0A0A0MQY5 61 aa4.51□□□□□ -1.69
SSBP4-209ENST00000601357 PHGR1C9JFL3 82 aa4.3□□□□□ -1.72
SSBP4-209ENST00000601357 INE1O15225 51 aa4.23□□□□□ -1.73
SSBP4-209ENST00000601357 H3BS24 57 aa4.19□□□□□ -1.74
SSBP4-209ENST00000601357 KRTAP4-4Q9BYR3 166 aa4.1□□□□□ -1.75
SSBP4-209ENST00000601357 MUC19Q7Z5P9 8384 aa3.93□□□□□ -1.78
SSBP4-209ENST00000601357 PRM1P04553 51 aa3.57□□□□□ -1.84
SSBP4-209ENST00000601357 KRTAP21-1Q3LI58 79 aa3.27□□□□□ -1.89
SSBP4-209ENST00000601357 MUC16Q8WXI7 14507 aa2.78□□□□□ -1.96
Retrieved 78 of 20,778 RNA–protein pairs in 100.8 ms