RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 Q1T7F1 81 aa5.75□□□□□ -1.49
TRIM28-206ENST00000595974 MT1MQ8N339 61 aa5.74□□□□□ -1.49
TRIM28-206ENST00000595974 PSPHP1O15172 72 aa5.73□□□□□ -1.49
TRIM28-206ENST00000595974 K7ERS5 55 aa5.71□□□□□ -1.5
TRIM28-206ENST00000595974 KRTAP25-1Q3LHN0 102 aa5.66□□□□□ -1.5
TRIM28-206ENST00000595974 KRTAP12-3P60328 96 aa5.65□□□□□ -1.5
TRIM28-206ENST00000595974 KRTAP4-3Q9BYR4 195 aa5.57□□□□□ -1.52
TRIM28-206ENST00000595974 A6NED7 52 aa5.56□□□□□ -1.52
TRIM28-206ENST00000595974 KRTAP4-9Q9BYQ8 210 aa5.56□□□□□ -1.52
TRIM28-206ENST00000595974 LCE4AQ5TA78 99 aa5.53□□□□□ -1.52
TRIM28-206ENST00000595974 RPS28P62857 69 aaKnown RBP5.5□□□□□ -1.53
TRIM28-206ENST00000595974 LCE1DQ5T752 114 aa5.48□□□□□ -1.53
TRIM28-206ENST00000595974 PCP4P48539 62 aa5.47□□□□□ -1.53
TRIM28-206ENST00000595974 KRTAP23-1A1A580 65 aa5.46□□□□□ -1.54
TRIM28-206ENST00000595974 KRTAP4-7Q9BYR0 210 aa5.46□□□□□ -1.54
TRIM28-206ENST00000595974 KRTAP5-4Q6L8H1 288 aa5.43□□□□□ -1.54
TRIM28-206ENST00000595974 HMCN1Q96RW7 5635 aa5.42□□□□□ -1.54
TRIM28-206ENST00000595974 MT4P47944 62 aa5.41□□□□□ -1.54
TRIM28-206ENST00000595974 CDC42SE1Q9NRR8 79 aa5.41□□□□□ -1.54
TRIM28-206ENST00000595974 GPR98Q8WXG9 6306 aa5.39□□□□□ -1.55
TRIM28-206ENST00000595974 KRTAP19-4Q3LI73 84 aa5.38□□□□□ -1.55
TRIM28-206ENST00000595974 ROMO1P60602 79 aa5.32□□□□□ -1.56
TRIM28-206ENST00000595974 KRTAP15-1Q3LI76 137 aa5.31□□□□□ -1.56
TRIM28-206ENST00000595974 KRTAP5-5Q701N2 237 aaPredicted RBP5.26□□□□□ -1.57
TRIM28-206ENST00000595974 KRTAP4-6Q9BYQ5 205 aa5.26□□□□□ -1.57
TRIM28-206ENST00000595974 AHNAK2Q8IVF2 5795 aa5.22□□□□□ -1.57
TRIM28-206ENST00000595974 LCE3CQ5T5A8 94 aa5.2□□□□□ -1.58
TRIM28-206ENST00000595974 LOC100996750A0A140TA64 210 aa5.17□□□□□ -1.58
TRIM28-206ENST00000595974 SPRR5A0A1B0GTR4 108 aa5.12□□□□□ -1.59
TRIM28-206ENST00000595974 KRTAP12-4P60329 112 aa5.11□□□□□ -1.59
TRIM28-206ENST00000595974 KRTAP20-2Q3LI61 65 aa5.11□□□□□ -1.59
TRIM28-206ENST00000595974 KRTAP5-10Q6L8G5 202 aa5.05□□□□□ -1.6
TRIM28-206ENST00000595974 SYNE1Q8NF91 8797 aaKnown RBP5.04□□□□□ -1.6
TRIM28-206ENST00000595974 KRTAP5-3Q6L8H2 238 aa4.96□□□□□ -1.62
TRIM28-206ENST00000595974 MT1AP04731 61 aa4.93□□□□□ -1.62
TRIM28-206ENST00000595974 KRTAP9-6A8MVA2 160 aa4.89□□□□□ -1.63
TRIM28-206ENST00000595974 KRTAP6-1Q3LI64 71 aa4.87□□□□□ -1.63
TRIM28-206ENST00000595974 KRTAP5-7Q6L8G8 165 aa4.85□□□□□ -1.63
TRIM28-206ENST00000595974 BRK1Q8WUW1 75 aa4.84□□□□□ -1.63
TRIM28-206ENST00000595974 KRTAP5-2Q701N4 177 aa4.78□□□□□ -1.64
TRIM28-206ENST00000595974 KRTAP9-4Q9BYQ2 154 aa4.73□□□□□ -1.65
TRIM28-206ENST00000595974 KRTAP6-2Q3LI66 62 aa4.64□□□□□ -1.67
TRIM28-206ENST00000595974 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
TRIM28-206ENST00000595974 SVIPQ8NHG7 77 aa4.57□□□□□ -1.68
TRIM28-206ENST00000595974 PMAIP1Q13794 54 aa4.54□□□□□ -1.68
TRIM28-206ENST00000595974 MT3P25713 68 aa4.51□□□□□ -1.69
TRIM28-206ENST00000595974 KRTAP5-8O75690 187 aa4.48□□□□□ -1.69
TRIM28-206ENST00000595974 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
TRIM28-206ENST00000595974 PRAC1Q96KF2 57 aa4.35□□□□□ -1.71
TRIM28-206ENST00000595974 MUC5BQ9HC84 5762 aaPredicted RBP4.27□□□□□ -1.73
TRIM28-206ENST00000595974 PRO0628Q9UI54 55 aa4.26□□□□□ -1.73
TRIM28-206ENST00000595974 KRTAP5-1Q6L8H4 278 aa4.25□□□□□ -1.73
TRIM28-206ENST00000595974 AHNAKQ09666 5890 aaKnown RBP4.25□□□□□ -1.73
TRIM28-206ENST00000595974 KRTAP9-9Q9BYP9 154 aa4.24□□□□□ -1.73
TRIM28-206ENST00000595974 MUC5ACP98088 5654 aa4.23□□□□□ -1.73
TRIM28-206ENST00000595974 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
TRIM28-206ENST00000595974 KTN1-AS1Q86SY8 53 aa4.07□□□□□ -1.76
TRIM28-206ENST00000595974 KRTAP4-2Q9BYR5 136 aa3.88□□□□□ -1.79
TRIM28-206ENST00000595974 H3BS24 57 aa3.87□□□□□ -1.79
TRIM28-206ENST00000595974 LCE1BQ5T7P3 118 aa3.85□□□□□ -1.79
TRIM28-206ENST00000595974 LCE1CQ5T751 118 aa3.83□□□□□ -1.8
TRIM28-206ENST00000595974 LCE3DQ9BYE3 92 aa3.77□□□□□ -1.81
TRIM28-206ENST00000595974 LUZP6Q538Z0 58 aa3.71□□□□□ -1.82
TRIM28-206ENST00000595974 LCE3EQ5T5B0 92 aa3.56□□□□□ -1.84
TRIM28-206ENST00000595974 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
TRIM28-206ENST00000595974 KRTAP5-11Q6L8G4 156 aa3.47□□□□□ -1.85
TRIM28-206ENST00000595974 KRTAP4-12Q9BQ66 201 aa3.44□□□□□ -1.86
TRIM28-206ENST00000595974 LCE1FQ5T754 118 aa3.35□□□□□ -1.87
TRIM28-206ENST00000595974 KRTAP21-2Q3LI59 83 aa3.21□□□□□ -1.9
TRIM28-206ENST00000595974 A0A0A0MQY5 61 aa3.04□□□□□ -1.92
TRIM28-206ENST00000595974 NDUFAF8A1L188 74 aa2.98□□□□□ -1.93
TRIM28-206ENST00000595974 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
TRIM28-206ENST00000595974 KRTAP4-4Q9BYR3 166 aa2.9□□□□□ -1.95
TRIM28-206ENST00000595974 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
TRIM28-206ENST00000595974 PRM1P04553 51 aa2.71□□□□□ -1.98
TRIM28-206ENST00000595974 INE1O15225 51 aa2.5□□□□□ -2.01
TRIM28-206ENST00000595974 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
TRIM28-206ENST00000595974 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 161.1 ms