RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, human

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-208	ENST00000595726	SPATA8	Q6RVD6	105 aa		5.16	□□□□□ -1.58
SHKBP1-208	ENST00000595726		A0A0D9SG42	100 aa		5.15	□□□□□ -1.59
SHKBP1-208	ENST00000595726		A0A1B0GU33	70 aa		5.15	□□□□□ -1.59
SHKBP1-208	ENST00000595726	KRTAP19-7	Q3SYF9	63 aa		5.15	□□□□□ -1.59
SHKBP1-208	ENST00000595726	PSPHP1	O15172	72 aa		5.14	□□□□□ -1.59
SHKBP1-208	ENST00000595726	MT1E	P04732	61 aa		5.13	□□□□□ -1.59
SHKBP1-208	ENST00000595726	KRTAP4-6	Q9BYQ5	205 aa		5.13	□□□□□ -1.59
SHKBP1-208	ENST00000595726	SPRR5	A0A1B0GTR4	108 aa		5.11	□□□□□ -1.59
SHKBP1-208	ENST00000595726	KRTAP5-3	Q6L8H2	238 aa		5.1	□□□□□ -1.59
SHKBP1-208	ENST00000595726	PRAC1	Q96KF2	57 aa		5.09	□□□□□ -1.59
SHKBP1-208	ENST00000595726	UQCR11	O14957	56 aa		5.08	□□□□□ -1.6
SHKBP1-208	ENST00000595726	KRTAP12-1	P59990	96 aa		5.07	□□□□□ -1.6
SHKBP1-208	ENST00000595726	SPINT4	Q6UDR6	99 aa		5.07	□□□□□ -1.6
SHKBP1-208	ENST00000595726	KRTAP15-1	Q3LI76	137 aa		5.06	□□□□□ -1.6
SHKBP1-208	ENST00000595726		A6NED7	52 aa		5.04	□□□□□ -1.6
SHKBP1-208	ENST00000595726	KRTAP5-4	Q6L8H1	288 aa		5.03	□□□□□ -1.6
SHKBP1-208	ENST00000595726	MT1G	P13640	62 aa		4.99	□□□□□ -1.61
SHKBP1-208	ENST00000595726	MIR22HG	Q0VDD5	57 aa		4.99	□□□□□ -1.61
SHKBP1-208	ENST00000595726		A8MU10	97 aa		4.98	□□□□□ -1.61
SHKBP1-208	ENST00000595726	MT1M	Q8N339	61 aa		4.93	□□□□□ -1.62
SHKBP1-208	ENST00000595726	KRTAP4-3	Q9BYR4	195 aa		4.93	□□□□□ -1.62
SHKBP1-208	ENST00000595726	PP632	Q6XCG6	107 aa		4.92	□□□□□ -1.62
SHKBP1-208	ENST00000595726	CDC42SE1	Q9NRR8	79 aa		4.92	□□□□□ -1.62
SHKBP1-208	ENST00000595726	BRK1	Q8WUW1	75 aa		4.89	□□□□□ -1.63
SHKBP1-208	ENST00000595726	KRTAP19-5	Q3LI72	72 aa		4.88	□□□□□ -1.63
SHKBP1-208	ENST00000595726		K7ERS5	55 aa		4.87	□□□□□ -1.63
SHKBP1-208	ENST00000595726	C10orf95	Q9H7T3	257 aa		4.84	□□□□□ -1.63
SHKBP1-208	ENST00000595726	KRTAP20-2	Q3LI61	65 aa		4.81	□□□□□ -1.64
SHKBP1-208	ENST00000595726	MT1L	Q93083	61 aa		4.8	□□□□□ -1.64
SHKBP1-208	ENST00000595726	TNP1	P09430	55 aa		4.79	□□□□□ -1.64
SHKBP1-208	ENST00000595726	LCE3A	Q5TA76	89 aa		4.78	□□□□□ -1.64
SHKBP1-208	ENST00000595726	AHNAK	Q09666	5890 aa	Known RBP	4.77	□□□□□ -1.65
SHKBP1-208	ENST00000595726	KRTAP9-4	Q9BYQ2	154 aa		4.75	□□□□□ -1.65
SHKBP1-208	ENST00000595726	PRO0628	Q9UI54	55 aa		4.74	□□□□□ -1.65
SHKBP1-208	ENST00000595726	MUC5AC	P98088	5654 aa		4.68	□□□□□ -1.66
SHKBP1-208	ENST00000595726	KRTAP9-9	Q9BYP9	154 aa		4.66	□□□□□ -1.66
SHKBP1-208	ENST00000595726	PMAIP1	Q13794	54 aa		4.64	□□□□□ -1.67
SHKBP1-208	ENST00000595726	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.63	□□□□□ -1.67
SHKBP1-208	ENST00000595726	KRTAP4-7	Q9BYR0	210 aa		4.63	□□□□□ -1.67
SHKBP1-208	ENST00000595726	SYNE1	Q8NF91	8797 aa	Known RBP	4.6	□□□□□ -1.67
SHKBP1-208	ENST00000595726	KRTAP4-12	Q9BQ66	201 aa		4.59	□□□□□ -1.67
SHKBP1-208	ENST00000595726	KRTAP12-3	P60328	96 aa		4.58	□□□□□ -1.68
SHKBP1-208	ENST00000595726	KRTAP12-4	P60329	112 aa		4.58	□□□□□ -1.68
SHKBP1-208	ENST00000595726	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.57	□□□□□ -1.68
SHKBP1-208	ENST00000595726	ROMO1	P60602	79 aa		4.56	□□□□□ -1.68
SHKBP1-208	ENST00000595726	KRTAP25-1	Q3LHN0	102 aa		4.55	□□□□□ -1.68
SHKBP1-208	ENST00000595726	LOC100996750	A0A140TA64	210 aa		4.54	□□□□□ -1.68
SHKBP1-208	ENST00000595726	KRTAP4-11	Q9BYQ6	195 aa		4.54	□□□□□ -1.68
SHKBP1-208	ENST00000595726	NDUFAF8	A1L188	74 aa		4.52	□□□□□ -1.69
SHKBP1-208	ENST00000595726	KRTAP5-8	O75690	187 aa		4.45	□□□□□ -1.7
SHKBP1-208	ENST00000595726	OBSCN	Q5VST9	7968 aa		4.43	□□□□□ -1.7
SHKBP1-208	ENST00000595726	KTN1-AS1	Q86SY8	53 aa		4.41	□□□□□ -1.7
SHKBP1-208	ENST00000595726	KRTAP5-2	Q701N4	177 aa		4.3	□□□□□ -1.72
SHKBP1-208	ENST00000595726	LCE3C	Q5T5A8	94 aa		4.23	□□□□□ -1.73
SHKBP1-208	ENST00000595726	KRTAP6-1	Q3LI64	71 aa		4.12	□□□□□ -1.75
SHKBP1-208	ENST00000595726	MT1A	P04731	61 aa		4.05	□□□□□ -1.76
SHKBP1-208	ENST00000595726	KRTAP6-2	Q3LI66	62 aa		4.05	□□□□□ -1.76
SHKBP1-208	ENST00000595726	MT3	P25713	68 aa		4.03	□□□□□ -1.76
SHKBP1-208	ENST00000595726	LUZP6	Q538Z0	58 aa		4.02	□□□□□ -1.77
SHKBP1-208	ENST00000595726	KRTAP9-6	A8MVA2	160 aa		4.01	□□□□□ -1.77
SHKBP1-208	ENST00000595726	KRTAP5-1	Q6L8H4	278 aa		3.99	□□□□□ -1.77
SHKBP1-208	ENST00000595726	LCE1F	Q5T754	118 aa		3.78	□□□□□ -1.8
SHKBP1-208	ENST00000595726	KRTAP4-2	Q9BYR5	136 aa		3.59	□□□□□ -1.83
SHKBP1-208	ENST00000595726	LCE1E	Q5T753	118 aa		3.55	□□□□□ -1.84
SHKBP1-208	ENST00000595726	LCE1B	Q5T7P3	118 aa		3.48	□□□□□ -1.85
SHKBP1-208	ENST00000595726	LCE1C	Q5T751	118 aa		3.3	□□□□□ -1.88
SHKBP1-208	ENST00000595726	LCE3E	Q5T5B0	92 aa		3.2	□□□□□ -1.9
SHKBP1-208	ENST00000595726	KRTAP5-11	Q6L8G4	156 aa		3.17	□□□□□ -1.9
SHKBP1-208	ENST00000595726	PHGR1	C9JFL3	82 aa		3.16	□□□□□ -1.9
SHKBP1-208	ENST00000595726	LCE3D	Q9BYE3	92 aa		3.05	□□□□□ -1.92
SHKBP1-208	ENST00000595726	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.91	□□□□□ -1.94
SHKBP1-208	ENST00000595726	INE1	O15225	51 aa		2.87	□□□□□ -1.95
SHKBP1-208	ENST00000595726	MUC19	Q7Z5P9	8384 aa		2.74	□□□□□ -1.97
SHKBP1-208	ENST00000595726	KRTAP21-2	Q3LI59	83 aa		2.7	□□□□□ -1.98
SHKBP1-208	ENST00000595726	KRTAP4-4	Q9BYR3	166 aa		2.65	□□□□□ -1.99
SHKBP1-208	ENST00000595726	KRTAP21-1	Q3LI58	79 aa		2.37	□□□□□ -2.03
SHKBP1-208	ENST00000595726	PRM1	P04553	51 aa		2.34	□□□□□ -2.03
SHKBP1-208	ENST00000595726	MUC16	Q8WXI7	14507 aa		1.82	□□□□□ -2.12

Retrieved 78 of 20,778 RNA–protein pairs in 71.2 ms