RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KRTAP25-1Q3LHN0 102 aa7.78□□□□□ -1.16
VPS53-210ENST00000571456 HMCN1Q96RW7 5635 aa7.68□□□□□ -1.18
VPS53-210ENST00000571456 KRTAP19-7Q3SYF9 63 aa7.67□□□□□ -1.18
VPS53-210ENST00000571456 AHNAK2Q8IVF2 5795 aa7.66□□□□□ -1.18
VPS53-210ENST00000571456 LCE3AQ5TA76 89 aa7.64□□□□□ -1.19
VPS53-210ENST00000571456 MT1EP04732 61 aa7.59□□□□□ -1.19
VPS53-210ENST00000571456 ROMO1P60602 79 aa7.59□□□□□ -1.19
VPS53-210ENST00000571456 LCE1DQ5T752 114 aa7.59□□□□□ -1.19
VPS53-210ENST00000571456 KRTAP23-1A1A580 65 aa7.58□□□□□ -1.2
VPS53-210ENST00000571456 KRTAP19-5Q3LI72 72 aa7.58□□□□□ -1.2
VPS53-210ENST00000571456 KRTAP5-10Q6L8G5 202 aa7.52□□□□□ -1.21
VPS53-210ENST00000571456 BRK1Q8WUW1 75 aa7.49□□□□□ -1.21
VPS53-210ENST00000571456 KRTAP19-3Q7Z4W3 81 aa7.47□□□□□ -1.21
VPS53-210ENST00000571456 KRTAP12-3P60328 96 aa7.42□□□□□ -1.22
VPS53-210ENST00000571456 LCE5AQ5TCM9 118 aa7.42□□□□□ -1.22
VPS53-210ENST00000571456 MT1GP13640 62 aa7.39□□□□□ -1.23
VPS53-210ENST00000571456 MT4P47944 62 aa7.39□□□□□ -1.23
VPS53-210ENST00000571456 PP632Q6XCG6 107 aa7.39□□□□□ -1.23
VPS53-210ENST00000571456 KRTAP5-7Q6L8G8 165 aa7.36□□□□□ -1.23
VPS53-210ENST00000571456 LCE4AQ5TA78 99 aa7.33□□□□□ -1.24
VPS53-210ENST00000571456 MT1LQ93083 61 aa7.33□□□□□ -1.24
VPS53-210ENST00000571456 KRTAP19-4Q3LI73 84 aa7.25□□□□□ -1.25
VPS53-210ENST00000571456 MT1MQ8N339 61 aa7.2□□□□□ -1.26
VPS53-210ENST00000571456 SPRR5A0A1B0GTR4 108 aa7.14□□□□□ -1.27
VPS53-210ENST00000571456 KRTAP5-3Q6L8H2 238 aa7.13□□□□□ -1.27
VPS53-210ENST00000571456 KRTAP15-1Q3LI76 137 aa7.11□□□□□ -1.27
VPS53-210ENST00000571456 PMAIP1Q13794 54 aa7.1□□□□□ -1.27
VPS53-210ENST00000571456 KRTAP4-6Q9BYQ5 205 aa7.08□□□□□ -1.28
VPS53-210ENST00000571456 KRTAP5-4Q6L8H1 288 aa7.03□□□□□ -1.28
VPS53-210ENST00000571456 PRO0628Q9UI54 55 aa7.01□□□□□ -1.29
VPS53-210ENST00000571456 LCE3CQ5T5A8 94 aa6.88□□□□□ -1.31
VPS53-210ENST00000571456 KRTAP4-7Q9BYR0 210 aa6.88□□□□□ -1.31
VPS53-210ENST00000571456 KRTAP4-3Q9BYR4 195 aa6.88□□□□□ -1.31
VPS53-210ENST00000571456 KRTAP20-2Q3LI61 65 aa6.69□□□□□ -1.34
VPS53-210ENST00000571456 AHNAKQ09666 5890 aaKnown RBP6.65□□□□□ -1.34
VPS53-210ENST00000571456 KTN1-AS1Q86SY8 53 aa6.59□□□□□ -1.35
VPS53-210ENST00000571456 PRAC1Q96KF2 57 aa6.59□□□□□ -1.35
VPS53-210ENST00000571456 KRTAP5-5Q701N2 237 aaPredicted RBP6.56□□□□□ -1.36
VPS53-210ENST00000571456 LOC100996750A0A140TA64 210 aa6.5□□□□□ -1.37
VPS53-210ENST00000571456 MUC5ACP98088 5654 aa6.5□□□□□ -1.37
VPS53-210ENST00000571456 MUC5BQ9HC84 5762 aaPredicted RBP6.44□□□□□ -1.38
VPS53-210ENST00000571456 SVIPQ8NHG7 77 aa6.44□□□□□ -1.38
VPS53-210ENST00000571456 KRTAP12-4P60329 112 aa6.41□□□□□ -1.38
VPS53-210ENST00000571456 KRTAP9-6A8MVA2 160 aa6.37□□□□□ -1.39
VPS53-210ENST00000571456 KRTAP4-11Q9BYQ6 195 aa6.35□□□□□ -1.39
VPS53-210ENST00000571456 H3BS24 57 aa6.29□□□□□ -1.4
VPS53-210ENST00000571456 MT1AP04731 61 aa6.29□□□□□ -1.4
VPS53-210ENST00000571456 SYNE1Q8NF91 8797 aaKnown RBP6.22□□□□□ -1.41
VPS53-210ENST00000571456 KRTAP5-8O75690 187 aa6.2□□□□□ -1.42
VPS53-210ENST00000571456 KRTAP6-1Q3LI64 71 aa6.15□□□□□ -1.42
VPS53-210ENST00000571456 KRTAP9-4Q9BYQ2 154 aa6.02□□□□□ -1.45
VPS53-210ENST00000571456 KRTAP9-9Q9BYP9 154 aa6.01□□□□□ -1.45
VPS53-210ENST00000571456 KRTAP5-2Q701N4 177 aa5.99□□□□□ -1.45
VPS53-210ENST00000571456 OBSCNQ5VST9 7968 aa5.89□□□□□ -1.47
VPS53-210ENST00000571456 KRTAP6-2Q3LI66 62 aa5.79□□□□□ -1.48
VPS53-210ENST00000571456 MT3P25713 68 aa5.76□□□□□ -1.49
VPS53-210ENST00000571456 LUZP6Q538Z0 58 aa5.69□□□□□ -1.5
VPS53-210ENST00000571456 KRTAP5-1Q6L8H4 278 aa5.55□□□□□ -1.52
VPS53-210ENST00000571456 LCE1EQ5T753 118 aa5.22□□□□□ -1.57
VPS53-210ENST00000571456 KRTAP4-12Q9BQ66 201 aa5.2□□□□□ -1.58
VPS53-210ENST00000571456 LCE3DQ9BYE3 92 aa5.08□□□□□ -1.6
VPS53-210ENST00000571456 A0A0A0MQY5 61 aa5.02□□□□□ -1.61
VPS53-210ENST00000571456 NDUFAF8A1L188 74 aa4.9□□□□□ -1.63
VPS53-210ENST00000571456 LCE3EQ5T5B0 92 aa4.86□□□□□ -1.63
VPS53-210ENST00000571456 LCE1CQ5T751 118 aa4.82□□□□□ -1.64
VPS53-210ENST00000571456 LCE1BQ5T7P3 118 aa4.82□□□□□ -1.64
VPS53-210ENST00000571456 KRTAP4-2Q9BYR5 136 aa4.79□□□□□ -1.64
VPS53-210ENST00000571456 KRTAP5-11Q6L8G4 156 aa4.47□□□□□ -1.69
VPS53-210ENST00000571456 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.46□□□□□ -1.7
VPS53-210ENST00000571456 PHGR1C9JFL3 82 aa4.43□□□□□ -1.7
VPS53-210ENST00000571456 LCE1FQ5T754 118 aa4.37□□□□□ -1.71
VPS53-210ENST00000571456 INE1O15225 51 aa4.16□□□□□ -1.74
VPS53-210ENST00000571456 KRTAP21-2Q3LI59 83 aa4.06□□□□□ -1.76
VPS53-210ENST00000571456 PRM1P04553 51 aa3.85□□□□□ -1.79
VPS53-210ENST00000571456 MUC19Q7Z5P9 8384 aa3.68□□□□□ -1.82
VPS53-210ENST00000571456 KRTAP4-4Q9BYR3 166 aa3.56□□□□□ -1.84
VPS53-210ENST00000571456 KRTAP21-1Q3LI58 79 aa3.38□□□□□ -1.87
VPS53-210ENST00000571456 MUC16Q8WXI7 14507 aa2.55□□□□□ -2
Retrieved 78 of 20,778 RNA–protein pairs in 101.3 ms