RNA–Protein interactions for RNA: ENST00000567060.5

CLN6-208, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 945 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-208ENST00000567060 KRTAP19-7Q3SYF9 63 aa6.23□□□□□ -1.41
CLN6-208ENST00000567060 ROMO1P60602 79 aa6.22□□□□□ -1.41
CLN6-208ENST00000567060 LCE3AQ5TA76 89 aa6.22□□□□□ -1.41
CLN6-208ENST00000567060 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
CLN6-208ENST00000567060 KRTAP4-9Q9BYQ8 210 aa6.19□□□□□ -1.42
CLN6-208ENST00000567060 MT1EP04732 61 aa6.17□□□□□ -1.42
CLN6-208ENST00000567060 KRTAP19-5Q3LI72 72 aa6.16□□□□□ -1.42
CLN6-208ENST00000567060 BRK1Q8WUW1 75 aa6.16□□□□□ -1.42
CLN6-208ENST00000567060 KRTAP19-3Q7Z4W3 81 aa6.06□□□□□ -1.44
CLN6-208ENST00000567060 PP632Q6XCG6 107 aa6.05□□□□□ -1.44
CLN6-208ENST00000567060 KRTAP12-3P60328 96 aa6.04□□□□□ -1.44
CLN6-208ENST00000567060 PRO0628Q9UI54 55 aa6.03□□□□□ -1.44
CLN6-208ENST00000567060 LCE5AQ5TCM9 118 aa6.02□□□□□ -1.45
CLN6-208ENST00000567060 MT1GP13640 62 aa6□□□□□ -1.45
CLN6-208ENST00000567060 HMCN1Q96RW7 5635 aa5.97□□□□□ -1.45
CLN6-208ENST00000567060 LCE1DQ5T752 114 aa5.97□□□□□ -1.45
CLN6-208ENST00000567060 MT1LQ93083 61 aa5.96□□□□□ -1.46
CLN6-208ENST00000567060 AHNAK2Q8IVF2 5795 aa5.94□□□□□ -1.46
CLN6-208ENST00000567060 KRTAP19-4Q3LI73 84 aa5.92□□□□□ -1.46
CLN6-208ENST00000567060 PMAIP1Q13794 54 aa5.85□□□□□ -1.47
CLN6-208ENST00000567060 MT1MQ8N339 61 aa5.84□□□□□ -1.47
CLN6-208ENST00000567060 MT4P47944 62 aa5.82□□□□□ -1.48
CLN6-208ENST00000567060 KRTAP5-10Q6L8G5 202 aa5.81□□□□□ -1.48
CLN6-208ENST00000567060 KRTAP15-1Q3LI76 137 aa5.8□□□□□ -1.48
CLN6-208ENST00000567060 LCE4AQ5TA78 99 aa5.79□□□□□ -1.48
CLN6-208ENST00000567060 SVIPQ8NHG7 77 aa5.72□□□□□ -1.49
CLN6-208ENST00000567060 H3BS24 57 aa5.67□□□□□ -1.5
CLN6-208ENST00000567060 KRTAP4-6Q9BYQ5 205 aa5.65□□□□□ -1.5
CLN6-208ENST00000567060 KRTAP5-4Q6L8H1 288 aa5.64□□□□□ -1.51
CLN6-208ENST00000567060 KRTAP5-7Q6L8G8 165 aa5.63□□□□□ -1.51
CLN6-208ENST00000567060 LCE3CQ5T5A8 94 aa5.6□□□□□ -1.51
CLN6-208ENST00000567060 KRTAP4-7Q9BYR0 210 aa5.59□□□□□ -1.51
CLN6-208ENST00000567060 KRTAP4-3Q9BYR4 195 aa5.58□□□□□ -1.52
CLN6-208ENST00000567060 KTN1-AS1Q86SY8 53 aa5.56□□□□□ -1.52
CLN6-208ENST00000567060 KRTAP5-3Q6L8H2 238 aa5.55□□□□□ -1.52
CLN6-208ENST00000567060 PRAC1Q96KF2 57 aa5.43□□□□□ -1.54
CLN6-208ENST00000567060 SPRR5A0A1B0GTR4 108 aa5.37□□□□□ -1.55
CLN6-208ENST00000567060 KRTAP20-2Q3LI61 65 aa5.34□□□□□ -1.55
CLN6-208ENST00000567060 KRTAP5-5Q701N2 237 aaPredicted RBP5.34□□□□□ -1.55
CLN6-208ENST00000567060 LOC100996750A0A140TA64 210 aa5.27□□□□□ -1.57
CLN6-208ENST00000567060 KRTAP9-6A8MVA2 160 aa5.19□□□□□ -1.58
CLN6-208ENST00000567060 SYNE1Q8NF91 8797 aaKnown RBP5.14□□□□□ -1.59
CLN6-208ENST00000567060 KRTAP12-4P60329 112 aa5.14□□□□□ -1.59
CLN6-208ENST00000567060 MT1AP04731 61 aa5.11□□□□□ -1.59
CLN6-208ENST00000567060 AHNAKQ09666 5890 aaKnown RBP5.01□□□□□ -1.61
CLN6-208ENST00000567060 KRTAP4-11Q9BYQ6 195 aa5□□□□□ -1.61
CLN6-208ENST00000567060 KRTAP6-1Q3LI64 71 aa4.99□□□□□ -1.61
CLN6-208ENST00000567060 MUC5BQ9HC84 5762 aaPredicted RBP4.97□□□□□ -1.61
CLN6-208ENST00000567060 MUC5ACP98088 5654 aa4.96□□□□□ -1.61
CLN6-208ENST00000567060 KRTAP9-4Q9BYQ2 154 aa4.89□□□□□ -1.63
CLN6-208ENST00000567060 KRTAP5-8O75690 187 aa4.87□□□□□ -1.63
CLN6-208ENST00000567060 KRTAP5-2Q701N4 177 aa4.85□□□□□ -1.63
CLN6-208ENST00000567060 OBSCNQ5VST9 7968 aa4.81□□□□□ -1.64
CLN6-208ENST00000567060 KRTAP6-2Q3LI66 62 aa4.69□□□□□ -1.66
CLN6-208ENST00000567060 MT3P25713 68 aa4.68□□□□□ -1.66
CLN6-208ENST00000567060 LUZP6Q538Z0 58 aa4.68□□□□□ -1.66
CLN6-208ENST00000567060 KRTAP9-9Q9BYP9 154 aa4.65□□□□□ -1.67
CLN6-208ENST00000567060 KRTAP5-1Q6L8H4 278 aa4.46□□□□□ -1.7
CLN6-208ENST00000567060 KRTAP4-12Q9BQ66 201 aa4.33□□□□□ -1.72
CLN6-208ENST00000567060 A0A0A0MQY5 61 aa4.3□□□□□ -1.72
CLN6-208ENST00000567060 NDUFAF8A1L188 74 aa4.29□□□□□ -1.72
CLN6-208ENST00000567060 LCE1EQ5T753 118 aa4.24□□□□□ -1.73
CLN6-208ENST00000567060 LCE3DQ9BYE3 92 aa4.13□□□□□ -1.75
CLN6-208ENST00000567060 LCE3EQ5T5B0 92 aa3.97□□□□□ -1.77
CLN6-208ENST00000567060 LCE1CQ5T751 118 aa3.91□□□□□ -1.78
CLN6-208ENST00000567060 LCE1BQ5T7P3 118 aa3.91□□□□□ -1.78
CLN6-208ENST00000567060 KRTAP4-2Q9BYR5 136 aa3.91□□□□□ -1.78
CLN6-208ENST00000567060 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.63□□□□□ -1.83
CLN6-208ENST00000567060 INE1O15225 51 aa3.62□□□□□ -1.83
CLN6-208ENST00000567060 KRTAP5-11Q6L8G4 156 aa3.53□□□□□ -1.84
CLN6-208ENST00000567060 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
CLN6-208ENST00000567060 PHGR1C9JFL3 82 aa3.38□□□□□ -1.87
CLN6-208ENST00000567060 KRTAP21-2Q3LI59 83 aa3.3□□□□□ -1.88
CLN6-208ENST00000567060 PRM1P04553 51 aa3.16□□□□□ -1.9
CLN6-208ENST00000567060 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
CLN6-208ENST00000567060 KRTAP4-4Q9BYR3 166 aa2.93□□□□□ -1.94
CLN6-208ENST00000567060 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
CLN6-208ENST00000567060 MUC16Q8WXI7 14507 aa2.05□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms