RNA–Protein interactions for RNA: ENST00000566347.5

CLN6-207, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best) BASIC

Gene CLN6, Length 981 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-207ENST00000566347 LCE4AQ5TA78 99 aa7.1□□□□□ -1.27
CLN6-207ENST00000566347 C10orf95Q9H7T3 257 aa7.1□□□□□ -1.27
CLN6-207ENST00000566347 V9GYY9 64 aa7.02□□□□□ -1.29
CLN6-207ENST00000566347 UQCR11O14957 56 aa7.01□□□□□ -1.29
CLN6-207ENST00000566347 MT4P47944 62 aa7.01□□□□□ -1.29
CLN6-207ENST00000566347 HMCN1Q96RW7 5635 aa7□□□□□ -1.29
CLN6-207ENST00000566347 KRTAP4-3Q9BYR4 195 aa6.97□□□□□ -1.29
CLN6-207ENST00000566347 Q1T7F1 81 aa6.96□□□□□ -1.3
CLN6-207ENST00000566347 KRTAP5-4Q6L8H1 288 aa6.93□□□□□ -1.3
CLN6-207ENST00000566347 PSPHP1O15172 72 aa6.88□□□□□ -1.31
CLN6-207ENST00000566347 KRTAP12-3P60328 96 aa6.86□□□□□ -1.31
CLN6-207ENST00000566347 RPS28P62857 69 aaKnown RBP6.86□□□□□ -1.31
CLN6-207ENST00000566347 MIR22HGQ0VDD5 57 aa6.86□□□□□ -1.31
CLN6-207ENST00000566347 KRTAP4-6Q9BYQ5 205 aa6.79□□□□□ -1.32
CLN6-207ENST00000566347 AHNAK2Q8IVF2 5795 aa6.78□□□□□ -1.32
CLN6-207ENST00000566347 KRTAP4-7Q9BYR0 210 aa6.77□□□□□ -1.33
CLN6-207ENST00000566347 K7ERS5 55 aa6.71□□□□□ -1.34
CLN6-207ENST00000566347 A6NED7 52 aa6.69□□□□□ -1.34
CLN6-207ENST00000566347 KRTAP5-10Q6L8G5 202 aa6.68□□□□□ -1.34
CLN6-207ENST00000566347 KRTAP25-1Q3LHN0 102 aa6.67□□□□□ -1.34
CLN6-207ENST00000566347 KRTAP5-5Q701N2 237 aaPredicted RBP6.59□□□□□ -1.35
CLN6-207ENST00000566347 KRTAP20-2Q3LI61 65 aa6.54□□□□□ -1.36
CLN6-207ENST00000566347 SPRR5A0A1B0GTR4 108 aa6.52□□□□□ -1.37
CLN6-207ENST00000566347 KRTAP19-4Q3LI73 84 aa6.52□□□□□ -1.37
CLN6-207ENST00000566347 KRTAP5-3Q6L8H2 238 aa6.5□□□□□ -1.37
CLN6-207ENST00000566347 KRTAP12-4P60329 112 aa6.49□□□□□ -1.37
CLN6-207ENST00000566347 CDC42SE1Q9NRR8 79 aa6.48□□□□□ -1.37
CLN6-207ENST00000566347 KRTAP5-7Q6L8G8 165 aa6.46□□□□□ -1.38
CLN6-207ENST00000566347 LOC100996750A0A140TA64 210 aa6.43□□□□□ -1.38
CLN6-207ENST00000566347 KRTAP23-1A1A580 65 aa6.43□□□□□ -1.38
CLN6-207ENST00000566347 KRTAP15-1Q3LI76 137 aa6.37□□□□□ -1.39
CLN6-207ENST00000566347 SVIPQ8NHG7 77 aa6.35□□□□□ -1.39
CLN6-207ENST00000566347 SYNE1Q8NF91 8797 aaKnown RBP6.33□□□□□ -1.4
CLN6-207ENST00000566347 LCE3CQ5T5A8 94 aa6.3□□□□□ -1.4
CLN6-207ENST00000566347 ROMO1P60602 79 aa6.29□□□□□ -1.4
CLN6-207ENST00000566347 MT1AP04731 61 aa6.1□□□□□ -1.43
CLN6-207ENST00000566347 BRK1Q8WUW1 75 aa6.08□□□□□ -1.44
CLN6-207ENST00000566347 KRTAP6-1Q3LI64 71 aa6.05□□□□□ -1.44
CLN6-207ENST00000566347 KRTAP5-2Q701N4 177 aa6.05□□□□□ -1.44
CLN6-207ENST00000566347 KRTAP4-11Q9BYQ6 195 aa6.01□□□□□ -1.45
CLN6-207ENST00000566347 KRTAP9-4Q9BYQ2 154 aa5.92□□□□□ -1.46
CLN6-207ENST00000566347 KRTAP9-6A8MVA2 160 aa5.91□□□□□ -1.46
CLN6-207ENST00000566347 KRTAP6-2Q3LI66 62 aa5.82□□□□□ -1.48
CLN6-207ENST00000566347 PRO0628Q9UI54 55 aa5.82□□□□□ -1.48
CLN6-207ENST00000566347 KRTAP5-8O75690 187 aa5.8□□□□□ -1.48
CLN6-207ENST00000566347 PMAIP1Q13794 54 aa5.7□□□□□ -1.5
CLN6-207ENST00000566347 OBSCNQ5VST9 7968 aa5.64□□□□□ -1.51
CLN6-207ENST00000566347 MT3P25713 68 aa5.61□□□□□ -1.51
CLN6-207ENST00000566347 MUC5ACP98088 5654 aa5.6□□□□□ -1.51
CLN6-207ENST00000566347 MUC5BQ9HC84 5762 aaPredicted RBP5.6□□□□□ -1.51
CLN6-207ENST00000566347 AHNAKQ09666 5890 aaKnown RBP5.59□□□□□ -1.51
CLN6-207ENST00000566347 KRTAP9-9Q9BYP9 154 aa5.56□□□□□ -1.52
CLN6-207ENST00000566347 KRTAP5-1Q6L8H4 278 aa5.44□□□□□ -1.54
CLN6-207ENST00000566347 PRAC1Q96KF2 57 aa5.43□□□□□ -1.54
CLN6-207ENST00000566347 KTN1-AS1Q86SY8 53 aa5.4□□□□□ -1.54
CLN6-207ENST00000566347 LCE1EQ5T753 118 aa5.19□□□□□ -1.58
CLN6-207ENST00000566347 KRTAP4-2Q9BYR5 136 aa4.88□□□□□ -1.63
CLN6-207ENST00000566347 LCE1BQ5T7P3 118 aa4.87□□□□□ -1.63
CLN6-207ENST00000566347 LCE1CQ5T751 118 aa4.81□□□□□ -1.64
CLN6-207ENST00000566347 LUZP6Q538Z0 58 aa4.58□□□□□ -1.68
CLN6-207ENST00000566347 LCE3DQ9BYE3 92 aa4.52□□□□□ -1.69
CLN6-207ENST00000566347 KRTAP4-12Q9BQ66 201 aa4.45□□□□□ -1.7
CLN6-207ENST00000566347 H3BS24 57 aa4.39□□□□□ -1.71
CLN6-207ENST00000566347 KRTAP5-11Q6L8G4 156 aa4.37□□□□□ -1.71
CLN6-207ENST00000566347 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.36□□□□□ -1.71
CLN6-207ENST00000566347 LCE1FQ5T754 118 aa4.3□□□□□ -1.72
CLN6-207ENST00000566347 LCE3EQ5T5B0 92 aa4.23□□□□□ -1.73
CLN6-207ENST00000566347 NDUFAF8A1L188 74 aa4.12□□□□□ -1.75
CLN6-207ENST00000566347 A0A0A0MQY5 61 aa4.02□□□□□ -1.77
CLN6-207ENST00000566347 KRTAP21-2Q3LI59 83 aa4□□□□□ -1.77
CLN6-207ENST00000566347 PHGR1C9JFL3 82 aa3.9□□□□□ -1.79
CLN6-207ENST00000566347 KRTAP4-4Q9BYR3 166 aa3.66□□□□□ -1.82
CLN6-207ENST00000566347 INE1O15225 51 aa3.53□□□□□ -1.84
CLN6-207ENST00000566347 MUC19Q7Z5P9 8384 aa3.5□□□□□ -1.85
CLN6-207ENST00000566347 PRM1P04553 51 aa3.21□□□□□ -1.9
CLN6-207ENST00000566347 KRTAP21-1Q3LI58 79 aa2.99□□□□□ -1.93
CLN6-207ENST00000566347 MUC16Q8WXI7 14507 aa2.43□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 12.6 ms