RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SPRR5A0A1B0GTR4 108 aa4.2□□□□□ -1.74
SF3B3-204ENST00000563739 PRO2289Q9P1D8 64 aa4.2□□□□□ -1.74
SF3B3-204ENST00000563739 KRTAP10-7P60409 375 aaPredicted RBP4.19□□□□□ -1.74
SF3B3-204ENST00000563739 CDC42SE1Q9NRR8 79 aa4.19□□□□□ -1.74
SF3B3-204ENST00000563739 UQCR11O14957 56 aa4.18□□□□□ -1.74
SF3B3-204ENST00000563739 A8MU10 97 aa4.17□□□□□ -1.74
SF3B3-204ENST00000563739 SPATA8Q6RVD6 105 aa4.17□□□□□ -1.74
SF3B3-204ENST00000563739 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
SF3B3-204ENST00000563739 KRTAP10-12P60413 245 aa4.15□□□□□ -1.75
SF3B3-204ENST00000563739 MIR22HGQ0VDD5 57 aa4.15□□□□□ -1.75
SF3B3-204ENST00000563739 A0A1B0GU33 70 aa4.14□□□□□ -1.75
SF3B3-204ENST00000563739 P0C880 135 aa4.14□□□□□ -1.75
SF3B3-204ENST00000563739 R4GN34 69 aa4.09□□□□□ -1.75
SF3B3-204ENST00000563739 M0QZ58 72 aa4.07□□□□□ -1.76
SF3B3-204ENST00000563739 PLAC4Q8WY50 150 aa4.05□□□□□ -1.76
SF3B3-204ENST00000563739 PMAIP1Q13794 54 aa4.04□□□□□ -1.76
SF3B3-204ENST00000563739 KRTAP13-4Q3LI77 160 aa4.01□□□□□ -1.77
SF3B3-204ENST00000563739 LINC01554Q52M75 96 aa3.99□□□□□ -1.77
SF3B3-204ENST00000563739 KRTAP5-3Q6L8H2 238 aa3.98□□□□□ -1.77
SF3B3-204ENST00000563739 KRTAP19-7Q3SYF9 63 aa3.97□□□□□ -1.77
SF3B3-204ENST00000563739 MT4P47944 62 aa3.95□□□□□ -1.78
SF3B3-204ENST00000563739 AHNAKQ09666 5890 aaKnown RBP3.93□□□□□ -1.78
SF3B3-204ENST00000563739 A0A0D9SG42 100 aa3.93□□□□□ -1.78
SF3B3-204ENST00000563739 K7ERS5 55 aa3.93□□□□□ -1.78
SF3B3-204ENST00000563739 MT1EP04732 61 aa3.92□□□□□ -1.78
SF3B3-204ENST00000563739 KRTAP19-3Q7Z4W3 81 aa3.92□□□□□ -1.78
SF3B3-204ENST00000563739 KTN1-AS1Q86SY8 53 aa3.9□□□□□ -1.79
SF3B3-204ENST00000563739 KRTAP12-1P59990 96 aa3.88□□□□□ -1.79
SF3B3-204ENST00000563739 KRTAP5-4Q6L8H1 288 aa3.85□□□□□ -1.79
SF3B3-204ENST00000563739 SPINT4Q6UDR6 99 aa3.84□□□□□ -1.79
SF3B3-204ENST00000563739 MUC5ACP98088 5654 aa3.81□□□□□ -1.8
SF3B3-204ENST00000563739 ROMO1P60602 79 aa3.79□□□□□ -1.8
SF3B3-204ENST00000563739 CAMK2N1Q7Z7J9 78 aa3.78□□□□□ -1.8
SF3B3-204ENST00000563739 MUC5BQ9HC84 5762 aaPredicted RBP3.78□□□□□ -1.8
SF3B3-204ENST00000563739 PRAC1Q96KF2 57 aa3.77□□□□□ -1.81
SF3B3-204ENST00000563739 MT1MQ8N339 61 aa3.75□□□□□ -1.81
SF3B3-204ENST00000563739 MT1GP13640 62 aa3.74□□□□□ -1.81
SF3B3-204ENST00000563739 KRTAP4-3Q9BYR4 195 aa3.74□□□□□ -1.81
SF3B3-204ENST00000563739 KRTAP19-5Q3LI72 72 aa3.69□□□□□ -1.82
SF3B3-204ENST00000563739 KRTAP25-1Q3LHN0 102 aa3.68□□□□□ -1.82
SF3B3-204ENST00000563739 MT1LQ93083 61 aa3.67□□□□□ -1.82
SF3B3-204ENST00000563739 C10orf95Q9H7T3 257 aa3.67□□□□□ -1.82
SF3B3-204ENST00000563739 MT3P25713 68 aa3.63□□□□□ -1.83
SF3B3-204ENST00000563739 KRTAP20-2Q3LI61 65 aa3.63□□□□□ -1.83
SF3B3-204ENST00000563739 PP632Q6XCG6 107 aa3.62□□□□□ -1.83
SF3B3-204ENST00000563739 KRTAP5-5Q701N2 237 aaPredicted RBP3.54□□□□□ -1.84
SF3B3-204ENST00000563739 TNP1P09430 55 aa3.53□□□□□ -1.84
SF3B3-204ENST00000563739 SYNE1Q8NF91 8797 aaKnown RBP3.47□□□□□ -1.85
SF3B3-204ENST00000563739 LCE3AQ5TA76 89 aa3.47□□□□□ -1.85
SF3B3-204ENST00000563739 KRTAP5-8O75690 187 aa3.42□□□□□ -1.86
SF3B3-204ENST00000563739 KRTAP12-4P60329 112 aa3.35□□□□□ -1.87
SF3B3-204ENST00000563739 KRTAP12-3P60328 96 aa3.34□□□□□ -1.87
SF3B3-204ENST00000563739 KRTAP5-2Q701N4 177 aa3.32□□□□□ -1.88
SF3B3-204ENST00000563739 LCE1EQ5T753 118 aa3.26□□□□□ -1.89
SF3B3-204ENST00000563739 NDUFAF8A1L188 74 aa3.17□□□□□ -1.9
SF3B3-204ENST00000563739 OBSCNQ5VST9 7968 aa3.17□□□□□ -1.9
SF3B3-204ENST00000563739 KRTAP6-1Q3LI64 71 aa3.15□□□□□ -1.91
SF3B3-204ENST00000563739 KRTAP5-11Q6L8G4 156 aa3.12□□□□□ -1.91
SF3B3-204ENST00000563739 MT1AP04731 61 aa3.1□□□□□ -1.91
SF3B3-204ENST00000563739 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
SF3B3-204ENST00000563739 LCE3CQ5T5A8 94 aa3.08□□□□□ -1.92
SF3B3-204ENST00000563739 LUZP6Q538Z0 58 aa3.06□□□□□ -1.92
SF3B3-204ENST00000563739 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.06□□□□□ -1.92
SF3B3-204ENST00000563739 KRTAP6-2Q3LI66 62 aa3.05□□□□□ -1.92
SF3B3-204ENST00000563739 KRTAP5-1Q6L8H4 278 aa3.05□□□□□ -1.92
SF3B3-204ENST00000563739 KRTAP9-6A8MVA2 160 aa2.93□□□□□ -1.94
SF3B3-204ENST00000563739 LCE3EQ5T5B0 92 aa2.61□□□□□ -1.99
SF3B3-204ENST00000563739 INE1O15225 51 aa2.54□□□□□ -2
SF3B3-204ENST00000563739 PHGR1C9JFL3 82 aa2.53□□□□□ -2
SF3B3-204ENST00000563739 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
SF3B3-204ENST00000563739 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
SF3B3-204ENST00000563739 KRTAP4-4Q9BYR3 166 aa2.48□□□□□ -2.01
SF3B3-204ENST00000563739 LCE3DQ9BYE3 92 aa2.28□□□□□ -2.04
SF3B3-204ENST00000563739 KRTAP21-2Q3LI59 83 aa2.1□□□□□ -2.07
SF3B3-204ENST00000563739 PRM1P04553 51 aa1.98□□□□□ -2.09
SF3B3-204ENST00000563739 MUC19Q7Z5P9 8384 aa1.97□□□□□ -2.09
SF3B3-204ENST00000563739 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
SF3B3-204ENST00000563739 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 101.5 ms