RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 LCE4AQ5TA78 99 aa4.69□□□□□ -1.66
SF3B3-202ENST00000562722 SEC61GP60059 68 aa4.68□□□□□ -1.66
SF3B3-202ENST00000562722 SERP1Q9Y6X1 66 aa4.67□□□□□ -1.66
SF3B3-202ENST00000562722 TMEM258P61165 79 aa4.66□□□□□ -1.66
SF3B3-202ENST00000562722 H7BZZ5 65 aa4.65□□□□□ -1.67
SF3B3-202ENST00000562722 SPATA8Q6RVD6 105 aa4.65□□□□□ -1.67
SF3B3-202ENST00000562722 MT1MQ8N339 61 aa4.64□□□□□ -1.67
SF3B3-202ENST00000562722 ATP5EP56381 51 aaPredicted RBP4.62□□□□□ -1.67
SF3B3-202ENST00000562722 COA5Q86WW8 74 aa4.62□□□□□ -1.67
SF3B3-202ENST00000562722 A0A1B0GU33 70 aa4.59□□□□□ -1.67
SF3B3-202ENST00000562722 MT1LQ93083 61 aa4.59□□□□□ -1.67
SF3B3-202ENST00000562722 KRTAP12-1P59990 96 aa4.57□□□□□ -1.68
SF3B3-202ENST00000562722 KRTAP4-3Q9BYR4 195 aa4.55□□□□□ -1.68
SF3B3-202ENST00000562722 RPS28P62857 69 aaKnown RBP4.52□□□□□ -1.69
SF3B3-202ENST00000562722 KRTAP5-4Q6L8H1 288 aa4.52□□□□□ -1.69
SF3B3-202ENST00000562722 KRTAP5-10Q6L8G5 202 aa4.51□□□□□ -1.69
SF3B3-202ENST00000562722 C10orf95Q9H7T3 257 aa4.51□□□□□ -1.69
SF3B3-202ENST00000562722 LCE3AQ5TA76 89 aa4.49□□□□□ -1.69
SF3B3-202ENST00000562722 SMIM26A0A096LP01 95 aa4.47□□□□□ -1.69
SF3B3-202ENST00000562722 TNP1P09430 55 aa4.46□□□□□ -1.7
SF3B3-202ENST00000562722 A8MU10 97 aa4.43□□□□□ -1.7
SF3B3-202ENST00000562722 A0A1B0GU69 56 aa4.41□□□□□ -1.7
SF3B3-202ENST00000562722 KRTAP15-1Q3LI76 137 aa4.37□□□□□ -1.71
SF3B3-202ENST00000562722 KRTAP5-7Q6L8G8 165 aa4.37□□□□□ -1.71
SF3B3-202ENST00000562722 V9GYY9 64 aa4.34□□□□□ -1.71
SF3B3-202ENST00000562722 KRTAP12-3P60328 96 aa4.32□□□□□ -1.72
SF3B3-202ENST00000562722 Q1T7F1 81 aa4.31□□□□□ -1.72
SF3B3-202ENST00000562722 KRTAP20-2Q3LI61 65 aa4.31□□□□□ -1.72
SF3B3-202ENST00000562722 LINC01558Q9Y6Z2 57 aa4.27□□□□□ -1.73
SF3B3-202ENST00000562722 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
SF3B3-202ENST00000562722 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
SF3B3-202ENST00000562722 KRTAP5-5Q701N2 237 aaPredicted RBP4.24□□□□□ -1.73
SF3B3-202ENST00000562722 PRR15LQ9BU68 103 aa4.24□□□□□ -1.73
SF3B3-202ENST00000562722 PSPHP1O15172 72 aa4.21□□□□□ -1.74
SF3B3-202ENST00000562722 SYNE1Q8NF91 8797 aaKnown RBP4.17□□□□□ -1.74
SF3B3-202ENST00000562722 A6NED7 52 aa4.1□□□□□ -1.75
SF3B3-202ENST00000562722 UQCR11O14957 56 aa4.1□□□□□ -1.75
SF3B3-202ENST00000562722 KRTAP25-1Q3LHN0 102 aa4.07□□□□□ -1.76
SF3B3-202ENST00000562722 MIR22HGQ0VDD5 57 aa4.04□□□□□ -1.76
SF3B3-202ENST00000562722 BRK1Q8WUW1 75 aa4.04□□□□□ -1.76
SF3B3-202ENST00000562722 CDC42SE1Q9NRR8 79 aa4.03□□□□□ -1.76
SF3B3-202ENST00000562722 AHNAKQ09666 5890 aaKnown RBP4.01□□□□□ -1.77
SF3B3-202ENST00000562722 PRAC1Q96KF2 57 aa3.99□□□□□ -1.77
SF3B3-202ENST00000562722 PRO0628Q9UI54 55 aa3.96□□□□□ -1.78
SF3B3-202ENST00000562722 K7ERS5 55 aa3.95□□□□□ -1.78
SF3B3-202ENST00000562722 LCE3CQ5T5A8 94 aa3.95□□□□□ -1.78
SF3B3-202ENST00000562722 KRTAP5-2Q701N4 177 aa3.92□□□□□ -1.78
SF3B3-202ENST00000562722 MUC5ACP98088 5654 aa3.9□□□□□ -1.78
SF3B3-202ENST00000562722 MUC5BQ9HC84 5762 aaPredicted RBP3.9□□□□□ -1.78
SF3B3-202ENST00000562722 MT1AP04731 61 aa3.9□□□□□ -1.79
SF3B3-202ENST00000562722 KRTAP6-1Q3LI64 71 aa3.89□□□□□ -1.79
SF3B3-202ENST00000562722 KRTAP5-8O75690 187 aa3.85□□□□□ -1.79
SF3B3-202ENST00000562722 PMAIP1Q13794 54 aa3.85□□□□□ -1.79
SF3B3-202ENST00000562722 KRTAP6-2Q3LI66 62 aa3.79□□□□□ -1.8
SF3B3-202ENST00000562722 OBSCNQ5VST9 7968 aa3.78□□□□□ -1.8
SF3B3-202ENST00000562722 KRTAP9-6A8MVA2 160 aa3.7□□□□□ -1.82
SF3B3-202ENST00000562722 ROMO1P60602 79 aa3.7□□□□□ -1.82
SF3B3-202ENST00000562722 KTN1-AS1Q86SY8 53 aa3.67□□□□□ -1.82
SF3B3-202ENST00000562722 NDUFAF8A1L188 74 aa3.63□□□□□ -1.83
SF3B3-202ENST00000562722 MT3P25713 68 aa3.6□□□□□ -1.83
SF3B3-202ENST00000562722 KRTAP5-1Q6L8H4 278 aa3.56□□□□□ -1.84
SF3B3-202ENST00000562722 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
SF3B3-202ENST00000562722 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
SF3B3-202ENST00000562722 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
SF3B3-202ENST00000562722 KRTAP5-11Q6L8G4 156 aa3.25□□□□□ -1.89
SF3B3-202ENST00000562722 LCE1BQ5T7P3 118 aa3.22□□□□□ -1.89
SF3B3-202ENST00000562722 LUZP6Q538Z0 58 aa3.21□□□□□ -1.9
SF3B3-202ENST00000562722 LCE1CQ5T751 118 aa3.09□□□□□ -1.91
SF3B3-202ENST00000562722 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
SF3B3-202ENST00000562722 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
SF3B3-202ENST00000562722 LCE3EQ5T5B0 92 aa2.72□□□□□ -1.97
SF3B3-202ENST00000562722 PHGR1C9JFL3 82 aa2.68□□□□□ -1.98
SF3B3-202ENST00000562722 KRTAP21-2Q3LI59 83 aa2.55□□□□□ -2
SF3B3-202ENST00000562722 INE1O15225 51 aa2.4□□□□□ -2.03
SF3B3-202ENST00000562722 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
SF3B3-202ENST00000562722 KRTAP21-1Q3LI58 79 aa2.03□□□□□ -2.08
SF3B3-202ENST00000562722 PRM1P04553 51 aa1.91□□□□□ -2.1
SF3B3-202ENST00000562722 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 56.7 ms