RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SERP2Q8N6R1 65 aa5.49□□□□□ -1.53
CLN3-208ENST00000561505 KRTAP4-7Q9BYR0 210 aa5.48□□□□□ -1.53
CLN3-208ENST00000561505 TNP1P09430 55 aa5.46□□□□□ -1.54
CLN3-208ENST00000561505 K7ERU9 68 aa5.42□□□□□ -1.54
CLN3-208ENST00000561505 SMIM26A0A096LP01 95 aa5.41□□□□□ -1.54
CLN3-208ENST00000561505 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
CLN3-208ENST00000561505 A8MU10 97 aa5.36□□□□□ -1.55
CLN3-208ENST00000561505 KRTAP12-4P60329 112 aa5.35□□□□□ -1.55
CLN3-208ENST00000561505 A0A1B0GU69 56 aa5.27□□□□□ -1.57
CLN3-208ENST00000561505 H7BZZ5 65 aa5.25□□□□□ -1.57
CLN3-208ENST00000561505 SYNE1Q8NF91 8797 aaKnown RBP5.22□□□□□ -1.57
CLN3-208ENST00000561505 LOC100996750A0A140TA64 210 aa5.2□□□□□ -1.58
CLN3-208ENST00000561505 COX7CP15954 63 aa5.2□□□□□ -1.58
CLN3-208ENST00000561505 KRTAP19-4Q3LI73 84 aa5.18□□□□□ -1.58
CLN3-208ENST00000561505 KRTAP4-11Q9BYQ6 195 aa5.13□□□□□ -1.59
CLN3-208ENST00000561505 KRTAP5-2Q701N4 177 aa5.1□□□□□ -1.59
CLN3-208ENST00000561505 KRTAP25-1Q3LHN0 102 aa5.01□□□□□ -1.61
CLN3-208ENST00000561505 KRTAP5-8O75690 187 aa5□□□□□ -1.61
CLN3-208ENST00000561505 PRR15LQ9BU68 103 aa4.98□□□□□ -1.61
CLN3-208ENST00000561505 MT1AP04731 61 aa4.95□□□□□ -1.62
CLN3-208ENST00000561505 LINC01558Q9Y6Z2 57 aa4.94□□□□□ -1.62
CLN3-208ENST00000561505 MUC5ACP98088 5654 aa4.93□□□□□ -1.62
CLN3-208ENST00000561505 KRTAP6-1Q3LI64 71 aa4.93□□□□□ -1.62
CLN3-208ENST00000561505 LCE3CQ5T5A8 94 aa4.93□□□□□ -1.62
CLN3-208ENST00000561505 MUC5BQ9HC84 5762 aaPredicted RBP4.92□□□□□ -1.62
CLN3-208ENST00000561505 AHNAKQ09666 5890 aaKnown RBP4.91□□□□□ -1.62
CLN3-208ENST00000561505 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
CLN3-208ENST00000561505 KRTAP23-1A1A580 65 aa4.89□□□□□ -1.63
CLN3-208ENST00000561505 ANAPC13Q9BS18 74 aa4.87□□□□□ -1.63
CLN3-208ENST00000561505 UQCR11O14957 56 aa4.86□□□□□ -1.63
CLN3-208ENST00000561505 KRTAP9-4Q9BYQ2 154 aa4.83□□□□□ -1.64
CLN3-208ENST00000561505 ATP5EP56381 51 aaPredicted RBP4.79□□□□□ -1.64
CLN3-208ENST00000561505 CCDC179H3BU77 68 aa4.78□□□□□ -1.64
CLN3-208ENST00000561505 KRTAP6-2Q3LI66 62 aa4.76□□□□□ -1.65
CLN3-208ENST00000561505 KRTAP9-9Q9BYP9 154 aa4.73□□□□□ -1.65
CLN3-208ENST00000561505 KRTAP9-6A8MVA2 160 aa4.7□□□□□ -1.66
CLN3-208ENST00000561505 MIR22HGQ0VDD5 57 aa4.69□□□□□ -1.66
CLN3-208ENST00000561505 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
CLN3-208ENST00000561505 KRTAP5-1Q6L8H4 278 aa4.64□□□□□ -1.67
CLN3-208ENST00000561505 K7ERS5 55 aa4.62□□□□□ -1.67
CLN3-208ENST00000561505 TMEM258P61165 79 aa4.59□□□□□ -1.67
CLN3-208ENST00000561505 MT3P25713 68 aa4.54□□□□□ -1.68
CLN3-208ENST00000561505 Q1T7F1 81 aa4.41□□□□□ -1.7
CLN3-208ENST00000561505 RPS28P62857 69 aaKnown RBP4.38□□□□□ -1.71
CLN3-208ENST00000561505 CDC42SE1Q9NRR8 79 aa4.36□□□□□ -1.71
CLN3-208ENST00000561505 PSPHP1O15172 72 aa4.35□□□□□ -1.71
CLN3-208ENST00000561505 V9GYY9 64 aa4.34□□□□□ -1.71
CLN3-208ENST00000561505 LCE1EQ5T753 118 aa4.32□□□□□ -1.72
CLN3-208ENST00000561505 ROMO1P60602 79 aa4.3□□□□□ -1.72
CLN3-208ENST00000561505 PCP4P48539 62 aa4.28□□□□□ -1.72
CLN3-208ENST00000561505 A6NED7 52 aa4.16□□□□□ -1.74
CLN3-208ENST00000561505 KRTAP4-2Q9BYR5 136 aa4.1□□□□□ -1.75
CLN3-208ENST00000561505 LCE1CQ5T751 118 aa4□□□□□ -1.77
CLN3-208ENST00000561505 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
CLN3-208ENST00000561505 KRTAP4-12Q9BQ66 201 aa3.74□□□□□ -1.81
CLN3-208ENST00000561505 BRK1Q8WUW1 75 aa3.71□□□□□ -1.82
CLN3-208ENST00000561505 KRTAP5-11Q6L8G4 156 aa3.69□□□□□ -1.82
CLN3-208ENST00000561505 LCE1FQ5T754 118 aa3.65□□□□□ -1.83
CLN3-208ENST00000561505 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.63□□□□□ -1.83
CLN3-208ENST00000561505 PMAIP1Q13794 54 aa3.49□□□□□ -1.85
CLN3-208ENST00000561505 LCE3DQ9BYE3 92 aa3.46□□□□□ -1.86
CLN3-208ENST00000561505 PHGR1C9JFL3 82 aa3.37□□□□□ -1.87
CLN3-208ENST00000561505 PRAC1Q96KF2 57 aa3.35□□□□□ -1.87
CLN3-208ENST00000561505 PRO0628Q9UI54 55 aa3.32□□□□□ -1.88
CLN3-208ENST00000561505 KRTAP21-2Q3LI59 83 aa3.3□□□□□ -1.88
CLN3-208ENST00000561505 LCE3EQ5T5B0 92 aa3.2□□□□□ -1.9
CLN3-208ENST00000561505 KTN1-AS1Q86SY8 53 aa3.15□□□□□ -1.91
CLN3-208ENST00000561505 SVIPQ8NHG7 77 aa3.01□□□□□ -1.93
CLN3-208ENST00000561505 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
CLN3-208ENST00000561505 MUC19Q7Z5P9 8384 aa2.92□□□□□ -1.94
CLN3-208ENST00000561505 LUZP6Q538Z0 58 aa2.78□□□□□ -1.96
CLN3-208ENST00000561505 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
CLN3-208ENST00000561505 NDUFAF8A1L188 74 aa2.35□□□□□ -2.03
CLN3-208ENST00000561505 PRM1P04553 51 aa2.14□□□□□ -2.07
CLN3-208ENST00000561505 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
CLN3-208ENST00000561505 A0A0A0MQY5 61 aa1.89□□□□□ -2.11
CLN3-208ENST00000561505 INE1O15225 51 aa1.89□□□□□ -2.11
CLN3-208ENST00000561505 H3BS24 57 aa1.26□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 10.1 ms