RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 MT4P47944 62 aa5.69□□□□□ -1.5
SNX1-213ENST00000561026 LCE3AQ5TA76 89 aa5.67□□□□□ -1.5
SNX1-213ENST00000561026 C10orf95Q9H7T3 257 aa5.67□□□□□ -1.5
SNX1-213ENST00000561026 TNP1P09430 55 aa5.65□□□□□ -1.51
SNX1-213ENST00000561026 KRTAP4-3Q9BYR4 195 aa5.65□□□□□ -1.51
SNX1-213ENST00000561026 KRTAP4-11Q9BYQ6 195 aa5.62□□□□□ -1.51
SNX1-213ENST00000561026 KRTAP5-4Q6L8H1 288 aa5.61□□□□□ -1.51
SNX1-213ENST00000561026 KRTAP19-4Q3LI73 84 aa5.58□□□□□ -1.52
SNX1-213ENST00000561026 AHNAK2Q8IVF2 5795 aa5.54□□□□□ -1.52
SNX1-213ENST00000561026 ANAPC13Q9BS18 74 aa5.48□□□□□ -1.53
SNX1-213ENST00000561026 PRR15LQ9BU68 103 aa5.48□□□□□ -1.53
SNX1-213ENST00000561026 KRTAP12-3P60328 96 aa5.47□□□□□ -1.53
SNX1-213ENST00000561026 KRTAP5-10Q6L8G5 202 aa5.46□□□□□ -1.54
SNX1-213ENST00000561026 LINC01558Q9Y6Z2 57 aa5.4□□□□□ -1.55
SNX1-213ENST00000561026 CCDC179H3BU77 68 aa5.39□□□□□ -1.55
SNX1-213ENST00000561026 ATP5EP56381 51 aaPredicted RBP5.38□□□□□ -1.55
SNX1-213ENST00000561026 H3BS24 57 aa5.36□□□□□ -1.55
SNX1-213ENST00000561026 KRTAP5-5Q701N2 237 aaPredicted RBP5.32□□□□□ -1.56
SNX1-213ENST00000561026 UQCR11O14957 56 aa5.3□□□□□ -1.56
SNX1-213ENST00000561026 KRTAP20-2Q3LI61 65 aa5.3□□□□□ -1.56
SNX1-213ENST00000561026 KRTAP5-3Q6L8H2 238 aa5.3□□□□□ -1.56
SNX1-213ENST00000561026 KRTAP5-7Q6L8G8 165 aa5.28□□□□□ -1.56
SNX1-213ENST00000561026 SPRR5A0A1B0GTR4 108 aa5.27□□□□□ -1.57
SNX1-213ENST00000561026 KRTAP25-1Q3LHN0 102 aa5.25□□□□□ -1.57
SNX1-213ENST00000561026 KRTAP12-4P60329 112 aa5.22□□□□□ -1.57
SNX1-213ENST00000561026 TMEM258P61165 79 aa5.16□□□□□ -1.58
SNX1-213ENST00000561026 MIR22HGQ0VDD5 57 aa5.16□□□□□ -1.58
SNX1-213ENST00000561026 K7ERS5 55 aa5.1□□□□□ -1.59
SNX1-213ENST00000561026 SYNE1Q8NF91 8797 aaKnown RBP5.1□□□□□ -1.59
SNX1-213ENST00000561026 KRTAP23-1A1A580 65 aa5.05□□□□□ -1.6
SNX1-213ENST00000561026 KRTAP15-1Q3LI76 137 aa5.05□□□□□ -1.6
SNX1-213ENST00000561026 LCE3CQ5T5A8 94 aa5.03□□□□□ -1.6
SNX1-213ENST00000561026 PSPHP1O15172 72 aa4.97□□□□□ -1.61
SNX1-213ENST00000561026 V9GYY9 64 aa4.94□□□□□ -1.62
SNX1-213ENST00000561026 Q1T7F1 81 aa4.91□□□□□ -1.62
SNX1-213ENST00000561026 MT1AP04731 61 aa4.89□□□□□ -1.63
SNX1-213ENST00000561026 KRTAP5-2Q701N4 177 aa4.89□□□□□ -1.63
SNX1-213ENST00000561026 PCP4P48539 62 aa4.88□□□□□ -1.63
SNX1-213ENST00000561026 KRTAP6-1Q3LI64 71 aa4.88□□□□□ -1.63
SNX1-213ENST00000561026 CDC42SE1Q9NRR8 79 aa4.8□□□□□ -1.64
SNX1-213ENST00000561026 A6NED7 52 aa4.78□□□□□ -1.64
SNX1-213ENST00000561026 KRTAP9-6A8MVA2 160 aa4.75□□□□□ -1.65
SNX1-213ENST00000561026 KRTAP5-8O75690 187 aa4.73□□□□□ -1.65
SNX1-213ENST00000561026 RPS28P62857 69 aaKnown RBP4.73□□□□□ -1.65
SNX1-213ENST00000561026 ROMO1P60602 79 aa4.72□□□□□ -1.65
SNX1-213ENST00000561026 KRTAP6-2Q3LI66 62 aa4.7□□□□□ -1.66
SNX1-213ENST00000561026 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
SNX1-213ENST00000561026 MUC5ACP98088 5654 aa4.61□□□□□ -1.67
SNX1-213ENST00000561026 MUC5BQ9HC84 5762 aaPredicted RBP4.6□□□□□ -1.67
SNX1-213ENST00000561026 AHNAKQ09666 5890 aaKnown RBP4.6□□□□□ -1.67
SNX1-213ENST00000561026 MT3P25713 68 aa4.49□□□□□ -1.69
SNX1-213ENST00000561026 KRTAP5-1Q6L8H4 278 aa4.42□□□□□ -1.7
SNX1-213ENST00000561026 SVIPQ8NHG7 77 aa4.28□□□□□ -1.72
SNX1-213ENST00000561026 LCE1EQ5T753 118 aa4.18□□□□□ -1.74
SNX1-213ENST00000561026 BRK1Q8WUW1 75 aa4.03□□□□□ -1.76
SNX1-213ENST00000561026 PRO0628Q9UI54 55 aa3.94□□□□□ -1.78
SNX1-213ENST00000561026 LCE1BQ5T7P3 118 aa3.93□□□□□ -1.78
SNX1-213ENST00000561026 LCE1CQ5T751 118 aa3.88□□□□□ -1.79
SNX1-213ENST00000561026 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.84□□□□□ -1.79
SNX1-213ENST00000561026 KRTAP5-11Q6L8G4 156 aa3.78□□□□□ -1.8
SNX1-213ENST00000561026 PMAIP1Q13794 54 aa3.77□□□□□ -1.81
SNX1-213ENST00000561026 PRAC1Q96KF2 57 aa3.68□□□□□ -1.82
SNX1-213ENST00000561026 KTN1-AS1Q86SY8 53 aa3.63□□□□□ -1.83
SNX1-213ENST00000561026 LCE3DQ9BYE3 92 aa3.59□□□□□ -1.83
SNX1-213ENST00000561026 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
SNX1-213ENST00000561026 LCE3EQ5T5B0 92 aa3.34□□□□□ -1.88
SNX1-213ENST00000561026 KRTAP21-2Q3LI59 83 aa3.22□□□□□ -1.89
SNX1-213ENST00000561026 KRTAP4-4Q9BYR3 166 aa3.21□□□□□ -1.9
SNX1-213ENST00000561026 PHGR1C9JFL3 82 aa3.18□□□□□ -1.9
SNX1-213ENST00000561026 LUZP6Q538Z0 58 aa3.05□□□□□ -1.92
SNX1-213ENST00000561026 A0A0A0MQY5 61 aa2.95□□□□□ -1.94
SNX1-213ENST00000561026 MUC19Q7Z5P9 8384 aa2.87□□□□□ -1.95
SNX1-213ENST00000561026 NDUFAF8A1L188 74 aa2.86□□□□□ -1.95
SNX1-213ENST00000561026 KRTAP21-1Q3LI58 79 aa2.42□□□□□ -2.02
SNX1-213ENST00000561026 PRM1P04553 51 aa2.39□□□□□ -2.03
SNX1-213ENST00000561026 INE1O15225 51 aa2.38□□□□□ -2.03
SNX1-213ENST00000561026 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 120.9 ms