RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 KRTAP4-3Q9BYR4 195 aa4.22□□□□□ -1.73
SPG11-219ENST00000559822 ATP5EP56381 51 aaPredicted RBP4.21□□□□□ -1.74
SPG11-219ENST00000559822 HMCN1Q96RW7 5635 aa4.2□□□□□ -1.74
SPG11-219ENST00000559822 KRTAP12-3P60328 96 aa4.16□□□□□ -1.74
SPG11-219ENST00000559822 LINC01558Q9Y6Z2 57 aa4.15□□□□□ -1.75
SPG11-219ENST00000559822 KRTAP4-6Q9BYQ5 205 aa4.14□□□□□ -1.75
SPG11-219ENST00000559822 CCDC179H3BU77 68 aa4.13□□□□□ -1.75
SPG11-219ENST00000559822 UQCR11O14957 56 aa4.11□□□□□ -1.75
SPG11-219ENST00000559822 KRTAP5-10Q6L8G5 202 aa4.11□□□□□ -1.75
SPG11-219ENST00000559822 KRTAP4-7Q9BYR0 210 aa4.08□□□□□ -1.76
SPG11-219ENST00000559822 KRTAP25-1Q3LHN0 102 aa4.05□□□□□ -1.76
SPG11-219ENST00000559822 AHNAK2Q8IVF2 5795 aa4.04□□□□□ -1.76
SPG11-219ENST00000559822 TMEM258P61165 79 aa4.02□□□□□ -1.77
SPG11-219ENST00000559822 K7ERS5 55 aa4□□□□□ -1.77
SPG11-219ENST00000559822 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
SPG11-219ENST00000559822 KRTAP5-5Q701N2 237 aaPredicted RBP4□□□□□ -1.77
SPG11-219ENST00000559822 SPRR5A0A1B0GTR4 108 aa3.99□□□□□ -1.77
SPG11-219ENST00000559822 KRTAP19-4Q3LI73 84 aa3.99□□□□□ -1.77
SPG11-219ENST00000559822 KRTAP5-3Q6L8H2 238 aa3.99□□□□□ -1.77
SPG11-219ENST00000559822 KRTAP12-4P60329 112 aa3.98□□□□□ -1.77
SPG11-219ENST00000559822 MIR22HGQ0VDD5 57 aa3.98□□□□□ -1.77
SPG11-219ENST00000559822 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
SPG11-219ENST00000559822 KRTAP23-1A1A580 65 aa3.89□□□□□ -1.79
SPG11-219ENST00000559822 LOC100996750A0A140TA64 210 aa3.88□□□□□ -1.79
SPG11-219ENST00000559822 V9GYY9 64 aa3.87□□□□□ -1.79
SPG11-219ENST00000559822 KRTAP15-1Q3LI76 137 aa3.85□□□□□ -1.79
SPG11-219ENST00000559822 SVIPQ8NHG7 77 aa3.82□□□□□ -1.8
SPG11-219ENST00000559822 PSPHP1O15172 72 aa3.81□□□□□ -1.8
SPG11-219ENST00000559822 LCE3CQ5T5A8 94 aa3.81□□□□□ -1.8
SPG11-219ENST00000559822 SYNE1Q8NF91 8797 aaKnown RBP3.79□□□□□ -1.8
SPG11-219ENST00000559822 Q1T7F1 81 aa3.78□□□□□ -1.8
SPG11-219ENST00000559822 CDC42SE1Q9NRR8 79 aa3.74□□□□□ -1.81
SPG11-219ENST00000559822 A6NED7 52 aa3.72□□□□□ -1.81
SPG11-219ENST00000559822 MT1AP04731 61 aa3.71□□□□□ -1.82
SPG11-219ENST00000559822 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
SPG11-219ENST00000559822 KRTAP4-11Q9BYQ6 195 aa3.68□□□□□ -1.82
SPG11-219ENST00000559822 RPS28P62857 69 aaKnown RBP3.67□□□□□ -1.82
SPG11-219ENST00000559822 KRTAP6-1Q3LI64 71 aa3.67□□□□□ -1.82
SPG11-219ENST00000559822 ROMO1P60602 79 aa3.65□□□□□ -1.83
SPG11-219ENST00000559822 KRTAP9-4Q9BYQ2 154 aa3.59□□□□□ -1.83
SPG11-219ENST00000559822 KRTAP9-6A8MVA2 160 aa3.55□□□□□ -1.84
SPG11-219ENST00000559822 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
SPG11-219ENST00000559822 KRTAP6-2Q3LI66 62 aa3.54□□□□□ -1.84
SPG11-219ENST00000559822 PCP4P48539 62 aa3.49□□□□□ -1.85
SPG11-219ENST00000559822 H3BS24 57 aa3.44□□□□□ -1.86
SPG11-219ENST00000559822 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
SPG11-219ENST00000559822 MT3P25713 68 aa3.42□□□□□ -1.86
SPG11-219ENST00000559822 MUC5ACP98088 5654 aa3.38□□□□□ -1.87
SPG11-219ENST00000559822 OBSCNQ5VST9 7968 aa3.37□□□□□ -1.87
SPG11-219ENST00000559822 MUC5BQ9HC84 5762 aaPredicted RBP3.36□□□□□ -1.87
SPG11-219ENST00000559822 AHNAKQ09666 5890 aaKnown RBP3.32□□□□□ -1.88
SPG11-219ENST00000559822 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
SPG11-219ENST00000559822 KRTAP4-12Q9BQ66 201 aa3.22□□□□□ -1.89
SPG11-219ENST00000559822 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
SPG11-219ENST00000559822 BRK1Q8WUW1 75 aa3.02□□□□□ -1.93
SPG11-219ENST00000559822 LCE1BQ5T7P3 118 aa2.97□□□□□ -1.93
SPG11-219ENST00000559822 KRTAP4-2Q9BYR5 136 aa2.97□□□□□ -1.93
SPG11-219ENST00000559822 LCE1CQ5T751 118 aa2.93□□□□□ -1.94
SPG11-219ENST00000559822 PRO0628Q9UI54 55 aa2.9□□□□□ -1.95
SPG11-219ENST00000559822 PMAIP1Q13794 54 aa2.83□□□□□ -1.96
SPG11-219ENST00000559822 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
SPG11-219ENST00000559822 PRAC1Q96KF2 57 aa2.72□□□□□ -1.97
SPG11-219ENST00000559822 KRTAP5-11Q6L8G4 156 aa2.67□□□□□ -1.98
SPG11-219ENST00000559822 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.66□□□□□ -1.98
SPG11-219ENST00000559822 LCE1FQ5T754 118 aa2.65□□□□□ -1.99
SPG11-219ENST00000559822 KTN1-AS1Q86SY8 53 aa2.62□□□□□ -1.99
SPG11-219ENST00000559822 LCE3EQ5T5B0 92 aa2.56□□□□□ -2
SPG11-219ENST00000559822 A0A0A0MQY5 61 aa2.5□□□□□ -2.01
SPG11-219ENST00000559822 KRTAP21-2Q3LI59 83 aa2.42□□□□□ -2.02
SPG11-219ENST00000559822 LUZP6Q538Z0 58 aa2.42□□□□□ -2.02
SPG11-219ENST00000559822 PHGR1C9JFL3 82 aa2.41□□□□□ -2.02
SPG11-219ENST00000559822 KRTAP4-4Q9BYR3 166 aa2.21□□□□□ -2.06
SPG11-219ENST00000559822 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
SPG11-219ENST00000559822 NDUFAF8A1L188 74 aa2.09□□□□□ -2.07
SPG11-219ENST00000559822 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
SPG11-219ENST00000559822 PRM1P04553 51 aa1.84□□□□□ -2.11
SPG11-219ENST00000559822 INE1O15225 51 aa1.83□□□□□ -2.12
SPG11-219ENST00000559822 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 58.8 ms