RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 DEFB136Q30KP8 78 aa-1.06□□□□□ -2.58
SCFD1-217ENST00000555953 ITPR2Q14571 2701 aa-1.08□□□□□ -2.58
SCFD1-217ENST00000555953 ATMQ13315 3056 aa-1.09□□□□□ -2.58
SCFD1-217ENST00000555953 TLN1Q9Y490 2541 aaKnown RBP-1.1□□□□□ -2.59
SCFD1-217ENST00000555953 MT1BP07438 61 aa-1.13□□□□□ -2.59
SCFD1-217ENST00000555953 WDFY3Q8IZQ1 3526 aa-1.13□□□□□ -2.59
SCFD1-217ENST00000555953 TOMM7Q9P0U1 55 aa-1.14□□□□□ -2.59
SCFD1-217ENST00000555953 SZT2Q5T011 3432 aa-1.14□□□□□ -2.59
SCFD1-217ENST00000555953 PCNTO95613 3336 aa-1.15□□□□□ -2.59
SCFD1-217ENST00000555953 DMDP11532 3685 aa-1.15□□□□□ -2.59
SCFD1-217ENST00000555953 FRYLO94915 3013 aa-1.16□□□□□ -2.59
SCFD1-217ENST00000555953 FREM2Q5SZK8 3169 aa-1.16□□□□□ -2.6
SCFD1-217ENST00000555953 WDFY4Q6ZS81 3184 aa-1.18□□□□□ -2.6
SCFD1-217ENST00000555953 RPL39P62891 51 aaKnown RBP-1.18□□□□□ -2.6
SCFD1-217ENST00000555953 TOMM5Q8N4H5 51 aa-1.19□□□□□ -2.6
SCFD1-217ENST00000555953 IQGAP2Q13576 1575 aa-1.21□□□□□ -2.6
SCFD1-217ENST00000555953 RPS29P62273 56 aaKnown RBP-1.23□□□□□ -2.61
SCFD1-217ENST00000555953 CEP250Q9BV73 2442 aa-1.23□□□□□ -2.61
SCFD1-217ENST00000555953 RPL39LQ96EH5 51 aaKnown RBP-1.24□□□□□ -2.61
SCFD1-217ENST00000555953 CEP350Q5VT06 3117 aa-1.24□□□□□ -2.61
SCFD1-217ENST00000555953 MUC3AQ02505 3323 aa-1.25□□□□□ -2.61
SCFD1-217ENST00000555953 SAMD9LQ8IVG5 1584 aa-1.25□□□□□ -2.61
SCFD1-217ENST00000555953 DUOX1Q9NRD9 1551 aa-1.25□□□□□ -2.61
SCFD1-217ENST00000555953 ATP7AQ04656 1500 aa-1.26□□□□□ -2.61
SCFD1-217ENST00000555953 BOD1L1Q8NFC6 3051 aa-1.26□□□□□ -2.61
SCFD1-217ENST00000555953 LINC01590Q5TEZ4 76 aa-1.28□□□□□ -2.61
SCFD1-217ENST00000555953 DEFB104AQ8WTQ1 72 aa-1.28□□□□□ -2.61
SCFD1-217ENST00000555953 SPEGQ15772 3267 aa-1.28□□□□□ -2.61
SCFD1-217ENST00000555953 A0A096LNI7 61 aa-1.29□□□□□ -2.62
SCFD1-217ENST00000555953 MT1FP04733 61 aa-1.31□□□□□ -2.62
SCFD1-217ENST00000555953 DNAH12Q6ZR08 3092 aa-1.31□□□□□ -2.62
SCFD1-217ENST00000555953 MKI67P46013 3256 aaKnown RBP-1.35□□□□□ -2.63
SCFD1-217ENST00000555953 XIRP2A4UGR9 3374 aa-1.35□□□□□ -2.63
SCFD1-217ENST00000555953 EP400Q96L91 3159 aa-1.35□□□□□ -2.63
SCFD1-217ENST00000555953 KRTAP20-1Q3LI63 56 aa-1.35□□□□□ -2.63
SCFD1-217ENST00000555953 RHPN1-AS1Q9BWJ2 59 aa-1.35□□□□□ -2.63
SCFD1-217ENST00000555953 TOP2AP11388 1531 aaKnown RBP-1.39□□□□□ -2.63
SCFD1-217ENST00000555953 HTN1P15515 57 aa-1.39□□□□□ -2.63
SCFD1-217ENST00000555953 DEFB133Q30KQ1 61 aa-1.39□□□□□ -2.63
SCFD1-217ENST00000555953 DCHS1Q96JQ0 3298 aa-1.41□□□□□ -2.64
SCFD1-217ENST00000555953 TTTY10Q9BZA0 68 aa-1.43□□□□□ -2.64
SCFD1-217ENST00000555953 MROH2BQ7Z745 1585 aa-1.43□□□□□ -2.64
SCFD1-217ENST00000555953 LOC400499M0QZD8 3231 aa-1.45□□□□□ -2.64
SCFD1-217ENST00000555953 USP34Q70CQ2 3546 aa-1.45□□□□□ -2.64
SCFD1-217ENST00000555953 ASPMQ8IZT6 3477 aa-1.46□□□□□ -2.64
SCFD1-217ENST00000555953 DNAH14Q0VDD8 3507 aa-1.49□□□□□ -2.65
SCFD1-217ENST00000555953 UNC80Q8N2C7 3258 aa-1.49□□□□□ -2.65
SCFD1-217ENST00000555953 CENPEQ02224 2701 aa-1.49□□□□□ -2.65
SCFD1-217ENST00000555953 CFAP47Q6ZTR5 3102 aa-1.49□□□□□ -2.65
SCFD1-217ENST00000555953 DEFB124Q8NES8 71 aa-1.49□□□□□ -2.65
SCFD1-217ENST00000555953 KRTAP19-6Q3LI70 58 aa-1.53□□□□□ -2.65
SCFD1-217ENST00000555953 BRCA2P51587 3418 aa-1.54□□□□□ -2.66
SCFD1-217ENST00000555953 KRTAP19-2Q3LHN2 52 aa-1.55□□□□□ -2.66
SCFD1-217ENST00000555953 CD52P31358 61 aa-1.58□□□□□ -2.66
SCFD1-217ENST00000555953 SNRPGP62308 76 aaKnown RBP-1.59□□□□□ -2.66
SCFD1-217ENST00000555953 K7EIM0 57 aa-1.62□□□□□ -2.67
SCFD1-217ENST00000555953 ARHGAP5-AS1Q96IT6 56 aa-1.64□□□□□ -2.67
SCFD1-217ENST00000555953 VCANP13611 3396 aa-1.64□□□□□ -2.67
SCFD1-217ENST00000555953 LINC01556Q5JQF7 62 aa-1.66□□□□□ -2.68
SCFD1-217ENST00000555953 H3BUX3 64 aa-1.67□□□□□ -2.68
SCFD1-217ENST00000555953 PRCDQ00LT1 54 aa-1.68□□□□□ -2.68
SCFD1-217ENST00000555953 GCC2Q8IWJ2 1684 aa-1.68□□□□□ -2.68
SCFD1-217ENST00000555953 CENPFP49454 3210 aa-1.7□□□□□ -2.68
SCFD1-217ENST00000555953 CDH23Q9H251 3354 aa-1.75□□□□□ -2.69
SCFD1-217ENST00000555953 H3BSH0 61 aa-1.76□□□□□ -2.69
SCFD1-217ENST00000555953 A0A096LPF7 62 aa-1.77□□□□□ -2.69
SCFD1-217ENST00000555953 APELAP0DMC3 54 aa-1.77□□□□□ -2.69
SCFD1-217ENST00000555953 TMEM167AQ8TBQ9 72 aa-1.81□□□□□ -2.7
SCFD1-217ENST00000555953 VPS13AQ96RL7 3174 aa-1.82□□□□□ -2.7
SCFD1-217ENST00000555953 RPL39P5Q59GN2 51 aa-1.85□□□□□ -2.71
SCFD1-217ENST00000555953 DEFB108AA8MXU0 73 aa-1.9□□□□□ -2.71
SCFD1-217ENST00000555953 UTRNP46939 3433 aa-1.91□□□□□ -2.72
SCFD1-217ENST00000555953 HTN3P15516 51 aa-1.99□□□□□ -2.73
SCFD1-217ENST00000555953 GOLGB1Q14789 3259 aaKnown RBP-2.14□□□□□ -2.75
SCFD1-217ENST00000555953 Q9Y3F1 56 aa-2.24□□□□□ -2.77
SCFD1-217ENST00000555953 DEFB108BQ8NET1 73 aa-2.25□□□□□ -2.77
SCFD1-217ENST00000555953 COX14Q96I36 57 aa-2.38□□□□□ -2.79
SCFD1-217ENST00000555953 STATHP02808 62 aa-2.46□□□□□ -2.8
Retrieved 78 of 20,778 RNA–protein pairs in 77.4 ms