RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 MT1MQ8N339 61 aa5.81□□□□□ -1.48
VPS29-207ENST00000549970 LCE3AQ5TA76 89 aa5.8□□□□□ -1.48
VPS29-207ENST00000549970 MT1LQ93083 61 aa5.8□□□□□ -1.48
VPS29-207ENST00000549970 TNP1P09430 55 aa5.79□□□□□ -1.48
VPS29-207ENST00000549970 C10orf95Q9H7T3 257 aa5.79□□□□□ -1.48
VPS29-207ENST00000549970 CCDC179H3BU77 68 aa5.76□□□□□ -1.49
VPS29-207ENST00000549970 PRR15LQ9BU68 103 aa5.74□□□□□ -1.49
VPS29-207ENST00000549970 ATP5EP56381 51 aaPredicted RBP5.7□□□□□ -1.5
VPS29-207ENST00000549970 LCE4AQ5TA78 99 aa5.69□□□□□ -1.5
VPS29-207ENST00000549970 KRTAP4-3Q9BYR4 195 aa5.69□□□□□ -1.5
VPS29-207ENST00000549970 MT4P47944 62 aa5.68□□□□□ -1.5
VPS29-207ENST00000549970 HMCN1Q96RW7 5635 aa5.68□□□□□ -1.5
VPS29-207ENST00000549970 LINC01558Q9Y6Z2 57 aa5.66□□□□□ -1.5
VPS29-207ENST00000549970 KRTAP12-3P60328 96 aa5.57□□□□□ -1.52
VPS29-207ENST00000549970 KRTAP5-4Q6L8H1 288 aa5.56□□□□□ -1.52
VPS29-207ENST00000549970 UQCR11O14957 56 aa5.55□□□□□ -1.52
VPS29-207ENST00000549970 AHNAK2Q8IVF2 5795 aa5.53□□□□□ -1.52
VPS29-207ENST00000549970 TMEM258P61165 79 aa5.51□□□□□ -1.53
VPS29-207ENST00000549970 MIR22HGQ0VDD5 57 aa5.42□□□□□ -1.54
VPS29-207ENST00000549970 KRTAP25-1Q3LHN0 102 aa5.4□□□□□ -1.54
VPS29-207ENST00000549970 KRTAP5-10Q6L8G5 202 aa5.36□□□□□ -1.55
VPS29-207ENST00000549970 K7ERS5 55 aa5.34□□□□□ -1.55
VPS29-207ENST00000549970 KRTAP5-5Q701N2 237 aaPredicted RBP5.32□□□□□ -1.56
VPS29-207ENST00000549970 PSPHP1O15172 72 aa5.28□□□□□ -1.56
VPS29-207ENST00000549970 KRTAP20-2Q3LI61 65 aa5.28□□□□□ -1.56
VPS29-207ENST00000549970 SYNE1Q8NF91 8797 aaKnown RBP5.26□□□□□ -1.57
VPS29-207ENST00000549970 V9GYY9 64 aa5.24□□□□□ -1.57
VPS29-207ENST00000549970 SPRR5A0A1B0GTR4 108 aa5.22□□□□□ -1.57
VPS29-207ENST00000549970 KRTAP12-4P60329 112 aa5.21□□□□□ -1.58
VPS29-207ENST00000549970 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.58
VPS29-207ENST00000549970 Q1T7F1 81 aa5.19□□□□□ -1.58
VPS29-207ENST00000549970 SVIPQ8NHG7 77 aa5.19□□□□□ -1.58
VPS29-207ENST00000549970 KRTAP23-1A1A580 65 aa5.16□□□□□ -1.58
VPS29-207ENST00000549970 KRTAP15-1Q3LI76 137 aa5.16□□□□□ -1.58
VPS29-207ENST00000549970 KRTAP5-7Q6L8G8 165 aa5.15□□□□□ -1.59
VPS29-207ENST00000549970 LCE3CQ5T5A8 94 aa5.1□□□□□ -1.59
VPS29-207ENST00000549970 A6NED7 52 aa5.09□□□□□ -1.59
VPS29-207ENST00000549970 CDC42SE1Q9NRR8 79 aa5.04□□□□□ -1.6
VPS29-207ENST00000549970 ROMO1P60602 79 aa4.95□□□□□ -1.62
VPS29-207ENST00000549970 MT1AP04731 61 aa4.93□□□□□ -1.62
VPS29-207ENST00000549970 KRTAP6-1Q3LI64 71 aa4.93□□□□□ -1.62
VPS29-207ENST00000549970 RPS28P62857 69 aaKnown RBP4.92□□□□□ -1.62
VPS29-207ENST00000549970 KRTAP5-2Q701N4 177 aa4.87□□□□□ -1.63
VPS29-207ENST00000549970 KRTAP9-6A8MVA2 160 aa4.83□□□□□ -1.64
VPS29-207ENST00000549970 KRTAP6-2Q3LI66 62 aa4.72□□□□□ -1.65
VPS29-207ENST00000549970 KRTAP5-8O75690 187 aa4.68□□□□□ -1.66
VPS29-207ENST00000549970 PCP4P48539 62 aa4.62□□□□□ -1.67
VPS29-207ENST00000549970 OBSCNQ5VST9 7968 aa4.62□□□□□ -1.67
VPS29-207ENST00000549970 MUC5BQ9HC84 5762 aaPredicted RBP4.54□□□□□ -1.68
VPS29-207ENST00000549970 AHNAKQ09666 5890 aaKnown RBP4.52□□□□□ -1.69
VPS29-207ENST00000549970 MT3P25713 68 aa4.52□□□□□ -1.69
VPS29-207ENST00000549970 MUC5ACP98088 5654 aa4.49□□□□□ -1.69
VPS29-207ENST00000549970 A0A0A0MQY5 61 aa4.43□□□□□ -1.7
VPS29-207ENST00000549970 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.4□□□□□ -1.71
VPS29-207ENST00000549970 KRTAP5-1Q6L8H4 278 aa4.38□□□□□ -1.71
VPS29-207ENST00000549970 BRK1Q8WUW1 75 aa4.23□□□□□ -1.73
VPS29-207ENST00000549970 LCE1EQ5T753 118 aa4.14□□□□□ -1.75
VPS29-207ENST00000549970 KRTAP5-11Q6L8G4 156 aa4.02□□□□□ -1.77
VPS29-207ENST00000549970 LCE1BQ5T7P3 118 aa3.97□□□□□ -1.77
VPS29-207ENST00000549970 PMAIP1Q13794 54 aa3.95□□□□□ -1.78
VPS29-207ENST00000549970 PRAC1Q96KF2 57 aa3.88□□□□□ -1.79
VPS29-207ENST00000549970 LCE1CQ5T751 118 aa3.86□□□□□ -1.79
VPS29-207ENST00000549970 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
VPS29-207ENST00000549970 KRTAP4-4Q9BYR3 166 aa3.62□□□□□ -1.83
VPS29-207ENST00000549970 PRO0628Q9UI54 55 aa3.49□□□□□ -1.85
VPS29-207ENST00000549970 LCE3EQ5T5B0 92 aa3.43□□□□□ -1.86
VPS29-207ENST00000549970 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
VPS29-207ENST00000549970 KTN1-AS1Q86SY8 53 aa3.41□□□□□ -1.86
VPS29-207ENST00000549970 NDUFAF8A1L188 74 aa3.39□□□□□ -1.87
VPS29-207ENST00000549970 LUZP6Q538Z0 58 aa3.28□□□□□ -1.88
VPS29-207ENST00000549970 KRTAP21-2Q3LI59 83 aa3.24□□□□□ -1.89
VPS29-207ENST00000549970 PHGR1C9JFL3 82 aa3.14□□□□□ -1.91
VPS29-207ENST00000549970 MUC19Q7Z5P9 8384 aa2.89□□□□□ -1.95
VPS29-207ENST00000549970 PRM1P04553 51 aa2.54□□□□□ -2
VPS29-207ENST00000549970 KRTAP21-1Q3LI58 79 aa2.37□□□□□ -2.03
VPS29-207ENST00000549970 MUC16Q8WXI7 14507 aa2.05□□□□□ -2.08
VPS29-207ENST00000549970 INE1O15225 51 aa1.9□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 24.1 ms