RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 KRTAP2-3P0C7H8 128 aa3.24□□□□□ -1.89
DEPDC4-208ENST00000549341 PMAIP1Q13794 54 aa3.24□□□□□ -1.89
DEPDC4-208ENST00000549341 KRTAP2-4Q9BYR9 128 aa3.24□□□□□ -1.89
DEPDC4-208ENST00000549341 A0A0D9SG42 100 aa3.23□□□□□ -1.89
DEPDC4-208ENST00000549341 A8MU10 97 aa3.21□□□□□ -1.9
DEPDC4-208ENST00000549341 KRTAP13-4Q3LI77 160 aa3.2□□□□□ -1.9
DEPDC4-208ENST00000549341 LINC01554Q52M75 96 aa3.2□□□□□ -1.9
DEPDC4-208ENST00000549341 SPINT4Q6UDR6 99 aa3.19□□□□□ -1.9
DEPDC4-208ENST00000549341 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
DEPDC4-208ENST00000549341 SPRR2EP22531 72 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2BP35325 72 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2AP35326 72 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP12-1P59990 96 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP4-3Q9BYR4 195 aa3.13□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP10-12P60413 245 aa3.12□□□□□ -1.91
DEPDC4-208ENST00000549341 PLAC4Q8WY50 150 aa3.12□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2GQ9BYE4 73 aa3.12□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP12-2P59991 146 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 CAMK2N1Q7Z7J9 78 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 KTN1-AS1Q86SY8 53 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2FQ96RM1 72 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP2-1Q9BYU5 128 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 MT1BP07438 61 aa3.1□□□□□ -1.91
DEPDC4-208ENST00000549341 ROMO1P60602 79 aa3.1□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2DP22532 72 aa3.05□□□□□ -1.92
DEPDC4-208ENST00000549341 KRTAP19-8Q3LI54 63 aa3.03□□□□□ -1.92
DEPDC4-208ENST00000549341 KRTAP5-2Q701N4 177 aa3.01□□□□□ -1.93
DEPDC4-208ENST00000549341 DSTQ03001 7570 aaKnown RBP2.99□□□□□ -1.93
DEPDC4-208ENST00000549341 KRTAP8-1Q8IUC2 63 aa2.98□□□□□ -1.93
DEPDC4-208ENST00000549341 PRO2289Q9P1D8 64 aa2.98□□□□□ -1.93
DEPDC4-208ENST00000549341 TNP1P09430 55 aa2.97□□□□□ -1.93
DEPDC4-208ENST00000549341 KRTAP25-1Q3LHN0 102 aa2.97□□□□□ -1.93
DEPDC4-208ENST00000549341 PRAC1Q96KF2 57 aa2.95□□□□□ -1.94
DEPDC4-208ENST00000549341 C10orf95Q9H7T3 257 aa2.94□□□□□ -1.94
DEPDC4-208ENST00000549341 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
DEPDC4-208ENST00000549341 PP632Q6XCG6 107 aa2.91□□□□□ -1.94
DEPDC4-208ENST00000549341 HMCN1Q96RW7 5635 aa2.9□□□□□ -1.95
DEPDC4-208ENST00000549341 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
DEPDC4-208ENST00000549341 MT1XP80297 61 aa2.85□□□□□ -1.95
DEPDC4-208ENST00000549341 LCE3AQ5TA76 89 aa2.84□□□□□ -1.95
DEPDC4-208ENST00000549341 LCE3CQ5T5A8 94 aa2.81□□□□□ -1.96
DEPDC4-208ENST00000549341 MT4P47944 62 aa2.71□□□□□ -1.98
DEPDC4-208ENST00000549341 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
DEPDC4-208ENST00000549341 SPRR5A0A1B0GTR4 108 aa2.66□□□□□ -1.98
DEPDC4-208ENST00000549341 KRTAP12-3P60328 96 aa2.66□□□□□ -1.98
DEPDC4-208ENST00000549341 KRTAP5-7Q6L8G8 165 aa2.63□□□□□ -1.99
DEPDC4-208ENST00000549341 KRTAP19-5Q3LI72 72 aa2.6□□□□□ -1.99
DEPDC4-208ENST00000549341 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -1.99
DEPDC4-208ENST00000549341 KRTAP19-3Q7Z4W3 81 aa2.58□□□□□ -2
DEPDC4-208ENST00000549341 KRTAP5-8O75690 187 aa2.56□□□□□ -2
DEPDC4-208ENST00000549341 LUZP6Q538Z0 58 aa2.56□□□□□ -2
DEPDC4-208ENST00000549341 AHNAKQ09666 5890 aaKnown RBP2.55□□□□□ -2
DEPDC4-208ENST00000549341 MT1EP04732 61 aa2.54□□□□□ -2
DEPDC4-208ENST00000549341 KRTAP19-7Q3SYF9 63 aa2.54□□□□□ -2
DEPDC4-208ENST00000549341 LCE3EQ5T5B0 92 aa2.54□□□□□ -2
DEPDC4-208ENST00000549341 A0A0A0MQY5 61 aa2.53□□□□□ -2
DEPDC4-208ENST00000549341 LCE1CQ5T751 118 aa2.53□□□□□ -2
DEPDC4-208ENST00000549341 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
DEPDC4-208ENST00000549341 MT1LQ93083 61 aa2.47□□□□□ -2.01
DEPDC4-208ENST00000549341 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
DEPDC4-208ENST00000549341 MT1GP13640 62 aa2.45□□□□□ -2.02
DEPDC4-208ENST00000549341 MT1MQ8N339 61 aa2.44□□□□□ -2.02
DEPDC4-208ENST00000549341 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
DEPDC4-208ENST00000549341 KRTAP20-2Q3LI61 65 aa2.4□□□□□ -2.03
DEPDC4-208ENST00000549341 NDUFAF8A1L188 74 aa2.39□□□□□ -2.03
DEPDC4-208ENST00000549341 KRTAP12-4P60329 112 aa2.29□□□□□ -2.04
DEPDC4-208ENST00000549341 SYNE1Q8NF91 8797 aaKnown RBP2.28□□□□□ -2.04
DEPDC4-208ENST00000549341 MT1AP04731 61 aa2.13□□□□□ -2.07
DEPDC4-208ENST00000549341 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
DEPDC4-208ENST00000549341 INE1O15225 51 aa2.06□□□□□ -2.08
DEPDC4-208ENST00000549341 KRTAP6-1Q3LI64 71 aa2.06□□□□□ -2.08
DEPDC4-208ENST00000549341 KRTAP6-2Q3LI66 62 aa2.01□□□□□ -2.09
DEPDC4-208ENST00000549341 LCE3DQ9BYE3 92 aa1.89□□□□□ -2.11
DEPDC4-208ENST00000549341 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
DEPDC4-208ENST00000549341 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
DEPDC4-208ENST00000549341 PRM1P04553 51 aa1.59□□□□□ -2.15
DEPDC4-208ENST00000549341 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
DEPDC4-208ENST00000549341 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 89.7 ms