RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 A8MU10 97 aa4.51□□□□□ -1.69
YBX3-217ENST00000546164 SPRR2DP22532 72 aa4.51□□□□□ -1.69
YBX3-217ENST00000546164 KRTAP19-7Q3SYF9 63 aa4.47□□□□□ -1.69
YBX3-217ENST00000546164 KRTAP2-2Q9BYT5 123 aa4.44□□□□□ -1.7
YBX3-217ENST00000546164 KRTAP2-1Q9BYU5 128 aa4.44□□□□□ -1.7
YBX3-217ENST00000546164 MT1EP04732 61 aa4.42□□□□□ -1.7
YBX3-217ENST00000546164 UQCR11O14957 56 aa4.39□□□□□ -1.71
YBX3-217ENST00000546164 C10orf95Q9H7T3 257 aa4.39□□□□□ -1.71
YBX3-217ENST00000546164 KRTAP19-3Q7Z4W3 81 aa4.37□□□□□ -1.71
YBX3-217ENST00000546164 TNP1P09430 55 aa4.36□□□□□ -1.71
YBX3-217ENST00000546164 KRTAP19-5Q3LI72 72 aa4.35□□□□□ -1.71
YBX3-217ENST00000546164 LCE1EQ5T753 118 aa4.34□□□□□ -1.71
YBX3-217ENST00000546164 V9GYY9 64 aa4.31□□□□□ -1.72
YBX3-217ENST00000546164 LCE3AQ5TA76 89 aa4.3□□□□□ -1.72
YBX3-217ENST00000546164 MIR22HGQ0VDD5 57 aa4.29□□□□□ -1.72
YBX3-217ENST00000546164 MT1GP13640 62 aa4.28□□□□□ -1.72
YBX3-217ENST00000546164 Q1T7F1 81 aa4.28□□□□□ -1.72
YBX3-217ENST00000546164 KRTAP5-1Q6L8H4 278 aa4.28□□□□□ -1.72
YBX3-217ENST00000546164 DSTQ03001 7570 aaKnown RBP4.26□□□□□ -1.73
YBX3-217ENST00000546164 PSPHP1O15172 72 aa4.24□□□□□ -1.73
YBX3-217ENST00000546164 PP632Q6XCG6 107 aa4.24□□□□□ -1.73
YBX3-217ENST00000546164 MT1LQ93083 61 aa4.24□□□□□ -1.73
YBX3-217ENST00000546164 KRTAP5-4Q6L8H1 288 aa4.23□□□□□ -1.73
YBX3-217ENST00000546164 MT1MQ8N339 61 aa4.2□□□□□ -1.74
YBX3-217ENST00000546164 K7ERS5 55 aa4.19□□□□□ -1.74
YBX3-217ENST00000546164 KRTAP25-1Q3LHN0 102 aa4.17□□□□□ -1.74
YBX3-217ENST00000546164 KRTAP12-3P60328 96 aa4.15□□□□□ -1.75
YBX3-217ENST00000546164 GPR98Q8WXG9 6306 aa4.15□□□□□ -1.75
YBX3-217ENST00000546164 RPS28P62857 69 aaKnown RBP4.14□□□□□ -1.75
YBX3-217ENST00000546164 KRTAP4-4Q9BYR3 166 aa4.14□□□□□ -1.75
YBX3-217ENST00000546164 A6NED7 52 aa4.1□□□□□ -1.75
YBX3-217ENST00000546164 PCP4P48539 62 aa4.1□□□□□ -1.75
YBX3-217ENST00000546164 KRTAP4-3Q9BYR4 195 aa4.06□□□□□ -1.76
YBX3-217ENST00000546164 HMCN1Q96RW7 5635 aa4.02□□□□□ -1.77
YBX3-217ENST00000546164 CDC42SE1Q9NRR8 79 aa3.99□□□□□ -1.77
YBX3-217ENST00000546164 ROMO1P60602 79 aa3.94□□□□□ -1.78
YBX3-217ENST00000546164 MT4P47944 62 aa3.92□□□□□ -1.78
YBX3-217ENST00000546164 MT3P25713 68 aa3.9□□□□□ -1.79
YBX3-217ENST00000546164 KRTAP5-5Q701N2 237 aaPredicted RBP3.87□□□□□ -1.79
YBX3-217ENST00000546164 AHNAK2Q8IVF2 5795 aa3.85□□□□□ -1.79
YBX3-217ENST00000546164 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
YBX3-217ENST00000546164 SYNE1Q8NF91 8797 aaKnown RBP3.78□□□□□ -1.8
YBX3-217ENST00000546164 SPRR5A0A1B0GTR4 108 aa3.75□□□□□ -1.81
YBX3-217ENST00000546164 OBSCNQ5VST9 7968 aa3.73□□□□□ -1.81
YBX3-217ENST00000546164 KRTAP20-2Q3LI61 65 aa3.73□□□□□ -1.81
YBX3-217ENST00000546164 KRTAP12-4P60329 112 aa3.72□□□□□ -1.81
YBX3-217ENST00000546164 KRTAP5-10Q6L8G5 202 aa3.71□□□□□ -1.82
YBX3-217ENST00000546164 KRTAP9-6A8MVA2 160 aa3.63□□□□□ -1.83
YBX3-217ENST00000546164 MT1AP04731 61 aa3.61□□□□□ -1.83
YBX3-217ENST00000546164 KRTAP5-7Q6L8G8 165 aa3.6□□□□□ -1.83
YBX3-217ENST00000546164 BRK1Q8WUW1 75 aa3.59□□□□□ -1.83
YBX3-217ENST00000546164 KRTAP5-2Q701N4 177 aa3.58□□□□□ -1.84
YBX3-217ENST00000546164 KRTAP6-1Q3LI64 71 aa3.57□□□□□ -1.84
YBX3-217ENST00000546164 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
YBX3-217ENST00000546164 PMAIP1Q13794 54 aa3.39□□□□□ -1.87
YBX3-217ENST00000546164 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
YBX3-217ENST00000546164 A0A0A0MQY5 61 aa3.36□□□□□ -1.87
YBX3-217ENST00000546164 KRTAP5-8O75690 187 aa3.27□□□□□ -1.89
YBX3-217ENST00000546164 PRAC1Q96KF2 57 aa3.24□□□□□ -1.89
YBX3-217ENST00000546164 PRO0628Q9UI54 55 aa3.2□□□□□ -1.9
YBX3-217ENST00000546164 AHNAKQ09666 5890 aaKnown RBP3.19□□□□□ -1.9
YBX3-217ENST00000546164 MUC5BQ9HC84 5762 aaPredicted RBP3.18□□□□□ -1.9
YBX3-217ENST00000546164 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
YBX3-217ENST00000546164 KTN1-AS1Q86SY8 53 aa3.05□□□□□ -1.92
YBX3-217ENST00000546164 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
YBX3-217ENST00000546164 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
YBX3-217ENST00000546164 SVIPQ8NHG7 77 aa2.88□□□□□ -1.95
YBX3-217ENST00000546164 LCE1CQ5T751 118 aa2.81□□□□□ -1.96
YBX3-217ENST00000546164 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
YBX3-217ENST00000546164 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
YBX3-217ENST00000546164 LUZP6Q538Z0 58 aa2.73□□□□□ -1.97
YBX3-217ENST00000546164 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.03
YBX3-217ENST00000546164 KRTAP21-2Q3LI59 83 aa2.37□□□□□ -2.03
YBX3-217ENST00000546164 PHGR1C9JFL3 82 aa2.19□□□□□ -2.06
YBX3-217ENST00000546164 PRM1P04553 51 aa2□□□□□ -2.09
YBX3-217ENST00000546164 INE1O15225 51 aa1.82□□□□□ -2.12
YBX3-217ENST00000546164 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
YBX3-217ENST00000546164 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 128.9 ms