RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 Q1T7F1 81 aa4.78□□□□□ -1.64
DDX55-213ENST00000545042 PP632Q6XCG6 107 aa4.78□□□□□ -1.64
DDX55-213ENST00000545042 MT1LQ93083 61 aa4.72□□□□□ -1.65
DDX55-213ENST00000545042 DSTQ03001 7570 aaKnown RBP4.7□□□□□ -1.66
DDX55-213ENST00000545042 KRTAP25-1Q3LHN0 102 aa4.68□□□□□ -1.66
DDX55-213ENST00000545042 MT1MQ8N339 61 aa4.68□□□□□ -1.66
DDX55-213ENST00000545042 A6NED7 52 aa4.65□□□□□ -1.67
DDX55-213ENST00000545042 KRTAP12-3P60328 96 aa4.65□□□□□ -1.67
DDX55-213ENST00000545042 RPS28P62857 69 aaKnown RBP4.6□□□□□ -1.67
DDX55-213ENST00000545042 KRTAP4-9Q9BYQ8 210 aa4.54□□□□□ -1.68
DDX55-213ENST00000545042 KRTAP4-3Q9BYR4 195 aa4.54□□□□□ -1.68
DDX55-213ENST00000545042 LCE4AQ5TA78 99 aa4.51□□□□□ -1.69
DDX55-213ENST00000545042 CDC42SE1Q9NRR8 79 aa4.51□□□□□ -1.69
DDX55-213ENST00000545042 KRTAP23-1A1A580 65 aa4.5□□□□□ -1.69
DDX55-213ENST00000545042 GPR98Q8WXG9 6306 aa4.5□□□□□ -1.69
DDX55-213ENST00000545042 KRTAP4-7Q9BYR0 210 aa4.47□□□□□ -1.69
DDX55-213ENST00000545042 LCE1DQ5T752 114 aa4.45□□□□□ -1.7
DDX55-213ENST00000545042 MT4P47944 62 aa4.43□□□□□ -1.7
DDX55-213ENST00000545042 ROMO1P60602 79 aa4.43□□□□□ -1.7
DDX55-213ENST00000545042 KRTAP19-4Q3LI73 84 aa4.43□□□□□ -1.7
DDX55-213ENST00000545042 KRTAP5-4Q6L8H1 288 aa4.4□□□□□ -1.71
DDX55-213ENST00000545042 KRTAP15-1Q3LI76 137 aa4.38□□□□□ -1.71
DDX55-213ENST00000545042 HMCN1Q96RW7 5635 aa4.36□□□□□ -1.71
DDX55-213ENST00000545042 KRTAP4-6Q9BYQ5 205 aa4.29□□□□□ -1.72
DDX55-213ENST00000545042 LCE3CQ5T5A8 94 aa4.28□□□□□ -1.72
DDX55-213ENST00000545042 AHNAK2Q8IVF2 5795 aa4.27□□□□□ -1.73
DDX55-213ENST00000545042 KRTAP5-5Q701N2 237 aaPredicted RBP4.26□□□□□ -1.73
DDX55-213ENST00000545042 SVIPQ8NHG7 77 aa4.25□□□□□ -1.73
DDX55-213ENST00000545042 LOC100996750A0A140TA64 210 aa4.24□□□□□ -1.73
DDX55-213ENST00000545042 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
DDX55-213ENST00000545042 SPRR5A0A1B0GTR4 108 aa4.17□□□□□ -1.74
DDX55-213ENST00000545042 KRTAP20-2Q3LI61 65 aa4.16□□□□□ -1.74
DDX55-213ENST00000545042 KRTAP5-10Q6L8G5 202 aa4.14□□□□□ -1.75
DDX55-213ENST00000545042 SYNE1Q8NF91 8797 aaKnown RBP4.09□□□□□ -1.76
DDX55-213ENST00000545042 BRK1Q8WUW1 75 aa4.07□□□□□ -1.76
DDX55-213ENST00000545042 MT1AP04731 61 aa4.03□□□□□ -1.76
DDX55-213ENST00000545042 KRTAP5-3Q6L8H2 238 aa4.02□□□□□ -1.77
DDX55-213ENST00000545042 KRTAP9-6A8MVA2 160 aa3.99□□□□□ -1.77
DDX55-213ENST00000545042 KRTAP5-7Q6L8G8 165 aa3.99□□□□□ -1.77
DDX55-213ENST00000545042 KRTAP6-1Q3LI64 71 aa3.98□□□□□ -1.77
DDX55-213ENST00000545042 PRO0628Q9UI54 55 aa3.94□□□□□ -1.78
DDX55-213ENST00000545042 KRTAP9-4Q9BYQ2 154 aa3.88□□□□□ -1.79
DDX55-213ENST00000545042 KRTAP5-2Q701N4 177 aa3.87□□□□□ -1.79
DDX55-213ENST00000545042 PMAIP1Q13794 54 aa3.84□□□□□ -1.79
DDX55-213ENST00000545042 KRTAP6-2Q3LI66 62 aa3.8□□□□□ -1.8
DDX55-213ENST00000545042 KRTAP4-11Q9BYQ6 195 aa3.78□□□□□ -1.8
DDX55-213ENST00000545042 MT3P25713 68 aa3.7□□□□□ -1.82
DDX55-213ENST00000545042 PRAC1Q96KF2 57 aa3.64□□□□□ -1.83
DDX55-213ENST00000545042 KRTAP5-8O75690 187 aa3.63□□□□□ -1.83
DDX55-213ENST00000545042 KTN1-AS1Q86SY8 53 aa3.63□□□□□ -1.83
DDX55-213ENST00000545042 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
DDX55-213ENST00000545042 AHNAKQ09666 5890 aaKnown RBP3.53□□□□□ -1.84
DDX55-213ENST00000545042 MUC5BQ9HC84 5762 aaPredicted RBP3.52□□□□□ -1.85
DDX55-213ENST00000545042 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
DDX55-213ENST00000545042 KRTAP9-9Q9BYP9 154 aa3.48□□□□□ -1.85
DDX55-213ENST00000545042 KRTAP5-1Q6L8H4 278 aa3.45□□□□□ -1.86
DDX55-213ENST00000545042 LCE1EQ5T753 118 aa3.37□□□□□ -1.87
DDX55-213ENST00000545042 LCE1BQ5T7P3 118 aa3.17□□□□□ -1.9
DDX55-213ENST00000545042 LUZP6Q538Z0 58 aa3.15□□□□□ -1.91
DDX55-213ENST00000545042 KRTAP4-2Q9BYR5 136 aa3.14□□□□□ -1.91
DDX55-213ENST00000545042 LCE1CQ5T751 118 aa3.12□□□□□ -1.91
DDX55-213ENST00000545042 LCE3DQ9BYE3 92 aa3.12□□□□□ -1.91
DDX55-213ENST00000545042 LCE3EQ5T5B0 92 aa2.95□□□□□ -1.94
DDX55-213ENST00000545042 H3BS24 57 aa2.91□□□□□ -1.94
DDX55-213ENST00000545042 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.84□□□□□ -1.95
DDX55-213ENST00000545042 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
DDX55-213ENST00000545042 KRTAP5-11Q6L8G4 156 aa2.81□□□□□ -1.96
DDX55-213ENST00000545042 NDUFAF8A1L188 74 aa2.8□□□□□ -1.96
DDX55-213ENST00000545042 LCE1FQ5T754 118 aa2.74□□□□□ -1.97
DDX55-213ENST00000545042 A0A0A0MQY5 61 aa2.62□□□□□ -1.99
DDX55-213ENST00000545042 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
DDX55-213ENST00000545042 PHGR1C9JFL3 82 aa2.43□□□□□ -2.02
DDX55-213ENST00000545042 INE1O15225 51 aa2.43□□□□□ -2.02
DDX55-213ENST00000545042 KRTAP4-4Q9BYR3 166 aa2.39□□□□□ -2.03
DDX55-213ENST00000545042 PRM1P04553 51 aa2.26□□□□□ -2.05
DDX55-213ENST00000545042 MUC19Q7Z5P9 8384 aa2.2□□□□□ -2.06
DDX55-213ENST00000545042 KRTAP21-1Q3LI58 79 aa1.83□□□□□ -2.12
DDX55-213ENST00000545042 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 83 ms