RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LRP2P98164 4655 aa2.77□□□□□ -1.97
VPS13D-211ENST00000543710 RYR3Q15413 4870 aa2.76□□□□□ -1.97
VPS13D-211ENST00000543710 MT4P47944 62 aa2.73□□□□□ -1.97
VPS13D-211ENST00000543710 MT1XP80297 61 aa2.73□□□□□ -1.97
VPS13D-211ENST00000543710 EPPK1P58107 5090 aaKnown RBP2.71□□□□□ -1.98
VPS13D-211ENST00000543710 MT1EP04732 61 aa2.68□□□□□ -1.98
VPS13D-211ENST00000543710 KRTAP9-8Q9BYQ0 159 aa2.68□□□□□ -1.98
VPS13D-211ENST00000543710 MT1BP07438 61 aa2.66□□□□□ -1.98
VPS13D-211ENST00000543710 LCE1AQ5T7P2 110 aa2.66□□□□□ -1.98
VPS13D-211ENST00000543710 KRTAP19-3Q7Z4W3 81 aa2.65□□□□□ -1.99
VPS13D-211ENST00000543710 KIAA1109Q2LD37 5005 aa2.65□□□□□ -1.99
VPS13D-211ENST00000543710 KRTAP19-2Q3LHN2 52 aa2.65□□□□□ -1.99
VPS13D-211ENST00000543710 MT1LQ93083 61 aa2.63□□□□□ -1.99
VPS13D-211ENST00000543710 LCE3EQ5T5B0 92 aa2.59□□□□□ -1.99
VPS13D-211ENST00000543710 GPR98Q8WXG9 6306 aa2.59□□□□□ -2
VPS13D-211ENST00000543710 LCE3DQ9BYE3 92 aa2.58□□□□□ -2
VPS13D-211ENST00000543710 SYNE2Q8WXH0 6885 aaKnown RBP2.58□□□□□ -2
VPS13D-211ENST00000543710 LPAP08519 4548 aa2.56□□□□□ -2
VPS13D-211ENST00000543710 FLGP20930 4061 aaPredicted RBP2.54□□□□□ -2
VPS13D-211ENST00000543710 KRTAP4-8A0A0G2JLE6 195 aa2.54□□□□□ -2
VPS13D-211ENST00000543710 LCE1DQ5T752 114 aa2.54□□□□□ -2
VPS13D-211ENST00000543710 KRTAP4-9Q9BYQ8 210 aa2.5□□□□□ -2.01
VPS13D-211ENST00000543710 ABCA13Q86UQ4 5058 aa2.48□□□□□ -2.01
VPS13D-211ENST00000543710 KRTAP4-7Q9BYR0 210 aa2.47□□□□□ -2.01
VPS13D-211ENST00000543710 MT1MQ8N339 61 aa2.46□□□□□ -2.01
VPS13D-211ENST00000543710 KRTAP4-11Q9BYQ6 195 aa2.46□□□□□ -2.02
VPS13D-211ENST00000543710 MT1AP04731 61 aa2.45□□□□□ -2.02
VPS13D-211ENST00000543710 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
VPS13D-211ENST00000543710 NEBP20929 6669 aa2.43□□□□□ -2.02
VPS13D-211ENST00000543710 KRTAP4-2Q9BYR5 136 aa2.41□□□□□ -2.02
VPS13D-211ENST00000543710 MUC2Q02817 5179 aa2.39□□□□□ -2.03
VPS13D-211ENST00000543710 OBSCNQ5VST9 7968 aa2.38□□□□□ -2.03
VPS13D-211ENST00000543710 LCE1FQ5T754 118 aa2.38□□□□□ -2.03
VPS13D-211ENST00000543710 RNF213Q63HN8 5207 aa2.36□□□□□ -2.03
VPS13D-211ENST00000543710 HMCN2Q8NDA2 5059 aa2.36□□□□□ -2.03
VPS13D-211ENST00000543710 UBR4Q5T4S7 5183 aa2.36□□□□□ -2.03
VPS13D-211ENST00000543710 LCE1CQ5T751 118 aa2.34□□□□□ -2.03
VPS13D-211ENST00000543710 LCE1EQ5T753 118 aa2.34□□□□□ -2.03
VPS13D-211ENST00000543710 PRM1P04553 51 aa2.3□□□□□ -2.04
VPS13D-211ENST00000543710 FAT4Q6V0I7 4981 aa2.3□□□□□ -2.04
VPS13D-211ENST00000543710 SYNE1Q8NF91 8797 aaKnown RBP2.28□□□□□ -2.04
VPS13D-211ENST00000543710 FSIP2Q5CZC0 6907 aa2.26□□□□□ -2.05
VPS13D-211ENST00000543710 MACF1Q9UPN3 7388 aaKnown RBP2.26□□□□□ -2.05
VPS13D-211ENST00000543710 KRTAP19-7Q3SYF9 63 aa2.2□□□□□ -2.06
VPS13D-211ENST00000543710 KRTAP5-9P26371 169 aa2.13□□□□□ -2.07
VPS13D-211ENST00000543710 USH2AO75445 5202 aa2.09□□□□□ -2.07
VPS13D-211ENST00000543710 DSTQ03001 7570 aaKnown RBP2.07□□□□□ -2.08
VPS13D-211ENST00000543710 KRTAP6-2Q3LI66 62 aa2.04□□□□□ -2.08
VPS13D-211ENST00000543710 KRTAP4-3Q9BYR4 195 aa2.04□□□□□ -2.08
VPS13D-211ENST00000543710 SSPOA2VEC9 5147 aa2.03□□□□□ -2.08
VPS13D-211ENST00000543710 AHNAK2Q8IVF2 5795 aa2.01□□□□□ -2.09
VPS13D-211ENST00000543710 KRTAP6-1Q3LI64 71 aa2.01□□□□□ -2.09
VPS13D-211ENST00000543710 KRTAP5-3Q6L8H2 238 aa1.99□□□□□ -2.09
VPS13D-211ENST00000543710 KRTAP9-6A8MVA2 160 aa1.98□□□□□ -2.09
VPS13D-211ENST00000543710 HMCN1Q96RW7 5635 aa1.95□□□□□ -2.1
VPS13D-211ENST00000543710 KRTAP5-4Q6L8H1 288 aa1.94□□□□□ -2.1
VPS13D-211ENST00000543710 FCGBPQ9Y6R7 5405 aaPredicted RBP1.94□□□□□ -2.1
VPS13D-211ENST00000543710 KRTAP20-2Q3LI61 65 aa1.93□□□□□ -2.1
VPS13D-211ENST00000543710 MDN1Q9NU22 5596 aa1.92□□□□□ -2.1
VPS13D-211ENST00000543710 KMT2DO14686 5537 aa1.91□□□□□ -2.1
VPS13D-211ENST00000543710 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
VPS13D-211ENST00000543710 MUC12Q9UKN1 5478 aa1.83□□□□□ -2.12
VPS13D-211ENST00000543710 KRTAP5-11Q6L8G4 156 aa1.75□□□□□ -2.13
VPS13D-211ENST00000543710 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
VPS13D-211ENST00000543710 MUC5ACP98088 5654 aa1.68□□□□□ -2.14
VPS13D-211ENST00000543710 KRTAP5-5Q701N2 237 aaPredicted RBP1.67□□□□□ -2.14
VPS13D-211ENST00000543710 PHGR1C9JFL3 82 aa1.65□□□□□ -2.15
VPS13D-211ENST00000543710 MUC5BQ9HC84 5762 aaPredicted RBP1.63□□□□□ -2.15
VPS13D-211ENST00000543710 KRTAP5-7Q6L8G8 165 aa1.56□□□□□ -2.16
VPS13D-211ENST00000543710 KRTAP5-8O75690 187 aa1.55□□□□□ -2.16
VPS13D-211ENST00000543710 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.5□□□□□ -2.17
VPS13D-211ENST00000543710 KRTAP5-1Q6L8H4 278 aa1.47□□□□□ -2.17
VPS13D-211ENST00000543710 KRTAP4-4Q9BYR3 166 aa1.45□□□□□ -2.18
VPS13D-211ENST00000543710 KRTAP5-10Q6L8G5 202 aa1.4□□□□□ -2.18
VPS13D-211ENST00000543710 KRTAP5-2Q701N4 177 aa1.4□□□□□ -2.19
VPS13D-211ENST00000543710 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
VPS13D-211ENST00000543710 KRTAP21-2Q3LI59 83 aa1.2□□□□□ -2.22
VPS13D-211ENST00000543710 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 135.5 ms