RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	KRTAP19-7	Q3SYF9	63 aa		4.11	□□□□□ -1.75
DDB1-222	ENST00000543627	CDC42SE1	Q9NRR8	79 aa		4.11	□□□□□ -1.75
DDB1-222	ENST00000543627	KRTAP19-5	Q3LI72	72 aa		4.1	□□□□□ -1.75
DDB1-222	ENST00000543627	GPR98	Q8WXG9	6306 aa		4.09	□□□□□ -1.75
DDB1-222	ENST00000543627	LCE3B	Q5TA77	95 aa		4.09	□□□□□ -1.75
DDB1-222	ENST00000543627	MT1E	P04732	61 aa		4.08	□□□□□ -1.76
DDB1-222	ENST00000543627		K7ERS5	55 aa		4.06	□□□□□ -1.76
DDB1-222	ENST00000543627	LCE3A	Q5TA76	89 aa		4.06	□□□□□ -1.76
DDB1-222	ENST00000543627	PRAC1	Q96KF2	57 aa		4.05	□□□□□ -1.76
DDB1-222	ENST00000543627	KRTAP19-3	Q7Z4W3	81 aa		4.04	□□□□□ -1.76
DDB1-222	ENST00000543627	LUZP6	Q538Z0	58 aa		4.03	□□□□□ -1.76
DDB1-222	ENST00000543627		A6NED7	52 aa		4.02	□□□□□ -1.77
DDB1-222	ENST00000543627	ROMO1	P60602	79 aa		4	□□□□□ -1.77
DDB1-222	ENST00000543627	LCE5A	Q5TCM9	118 aa		4	□□□□□ -1.77
DDB1-222	ENST00000543627	MT1G	P13640	62 aa		3.95	□□□□□ -1.78
DDB1-222	ENST00000543627	PP632	Q6XCG6	107 aa		3.95	□□□□□ -1.78
DDB1-222	ENST00000543627	DST	Q03001	7570 aa	Known RBP	3.93	□□□□□ -1.78
DDB1-222	ENST00000543627	KRTAP23-1	A1A580	65 aa		3.93	□□□□□ -1.78
DDB1-222	ENST00000543627	MT1L	Q93083	61 aa		3.93	□□□□□ -1.78
DDB1-222	ENST00000543627	KRTAP25-1	Q3LHN0	102 aa		3.91	□□□□□ -1.78
DDB1-222	ENST00000543627	KRTAP12-3	P60328	96 aa		3.89	□□□□□ -1.79
DDB1-222	ENST00000543627	MT1M	Q8N339	61 aa		3.89	□□□□□ -1.79
DDB1-222	ENST00000543627	KRTAP4-9	Q9BYQ8	210 aa		3.85	□□□□□ -1.79
DDB1-222	ENST00000543627	KRTAP4-3	Q9BYR4	195 aa		3.85	□□□□□ -1.79
DDB1-222	ENST00000543627	KRTAP4-7	Q9BYR0	210 aa		3.8	□□□□□ -1.8
DDB1-222	ENST00000543627	NDUFAF8	A1L188	74 aa		3.76	□□□□□ -1.81
DDB1-222	ENST00000543627	MT4	P47944	62 aa		3.72	□□□□□ -1.81
DDB1-222	ENST00000543627	KRTAP5-10	Q6L8G5	202 aa		3.7	□□□□□ -1.82
DDB1-222	ENST00000543627	LCE1D	Q5T752	114 aa		3.69	□□□□□ -1.82
DDB1-222	ENST00000543627	LCE4A	Q5TA78	99 aa		3.68	□□□□□ -1.82
DDB1-222	ENST00000543627	LOC100996750	A0A140TA64	210 aa		3.67	□□□□□ -1.82
DDB1-222	ENST00000543627	KRTAP15-1	Q3LI76	137 aa		3.67	□□□□□ -1.82
DDB1-222	ENST00000543627	KRTAP4-6	Q9BYQ5	205 aa		3.67	□□□□□ -1.82
DDB1-222	ENST00000543627	KRTAP5-7	Q6L8G8	165 aa		3.62	□□□□□ -1.83
DDB1-222	ENST00000543627	HMCN1	Q96RW7	5635 aa		3.61	□□□□□ -1.83
DDB1-222	ENST00000543627	LCE3C	Q5T5A8	94 aa		3.59	□□□□□ -1.83
DDB1-222	ENST00000543627	AHNAK2	Q8IVF2	5795 aa		3.58	□□□□□ -1.84
DDB1-222	ENST00000543627	KRTAP5-4	Q6L8H1	288 aa		3.58	□□□□□ -1.84
DDB1-222	ENST00000543627	KRTAP19-4	Q3LI73	84 aa		3.57	□□□□□ -1.84
DDB1-222	ENST00000543627	SPRR5	A0A1B0GTR4	108 aa		3.52	□□□□□ -1.85
DDB1-222	ENST00000543627	KRTAP5-3	Q6L8H2	238 aa		3.49	□□□□□ -1.85
DDB1-222	ENST00000543627	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.49	□□□□□ -1.85
DDB1-222	ENST00000543627	KRTAP12-4	P60329	112 aa		3.47	□□□□□ -1.85
DDB1-222	ENST00000543627	KRTAP20-2	Q3LI61	65 aa		3.43	□□□□□ -1.86
DDB1-222	ENST00000543627	SYNE1	Q8NF91	8797 aa	Known RBP	3.41	□□□□□ -1.86
DDB1-222	ENST00000543627	KRTAP9-6	A8MVA2	160 aa		3.35	□□□□□ -1.87
DDB1-222	ENST00000543627	KRTAP6-1	Q3LI64	71 aa		3.34	□□□□□ -1.87
DDB1-222	ENST00000543627	MT1A	P04731	61 aa		3.33	□□□□□ -1.88
DDB1-222	ENST00000543627	KRTAP9-4	Q9BYQ2	154 aa		3.23	□□□□□ -1.89
DDB1-222	ENST00000543627	INE1	O15225	51 aa		3.19	□□□□□ -1.9
DDB1-222	ENST00000543627	KRTAP6-2	Q3LI66	62 aa		3.18	□□□□□ -1.9
DDB1-222	ENST00000543627	KRTAP5-2	Q701N4	177 aa		3.15	□□□□□ -1.91
DDB1-222	ENST00000543627	KRTAP4-12	Q9BQ66	201 aa		3.14	□□□□□ -1.91
DDB1-222	ENST00000543627	KRTAP9-9	Q9BYP9	154 aa		3.11	□□□□□ -1.91
DDB1-222	ENST00000543627	MUC5AC	P98088	5654 aa		3.11	□□□□□ -1.91
DDB1-222	ENST00000543627	KRTAP4-11	Q9BYQ6	195 aa		3.1	□□□□□ -1.91
DDB1-222	ENST00000543627	AHNAK	Q09666	5890 aa	Known RBP	3.09	□□□□□ -1.91
DDB1-222	ENST00000543627	MT3	P25713	68 aa		3.07	□□□□□ -1.92
DDB1-222	ENST00000543627	OBSCN	Q5VST9	7968 aa		3.03	□□□□□ -1.92
DDB1-222	ENST00000543627	KRTAP5-8	O75690	187 aa		3.03	□□□□□ -1.92
DDB1-222	ENST00000543627	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.02	□□□□□ -1.93
DDB1-222	ENST00000543627	KRTAP4-2	Q9BYR5	136 aa		2.85	□□□□□ -1.95
DDB1-222	ENST00000543627	KRTAP5-1	Q6L8H4	278 aa		2.83	□□□□□ -1.96
DDB1-222	ENST00000543627	LCE1E	Q5T753	118 aa		2.73	□□□□□ -1.97
DDB1-222	ENST00000543627	LCE1B	Q5T7P3	118 aa		2.7	□□□□□ -1.98
DDB1-222	ENST00000543627	LCE3D	Q9BYE3	92 aa		2.63	□□□□□ -1.99
DDB1-222	ENST00000543627	LCE1C	Q5T751	118 aa		2.54	□□□□□ -2
DDB1-222	ENST00000543627	LCE3E	Q5T5B0	92 aa		2.49	□□□□□ -2.01
DDB1-222	ENST00000543627	LCE1F	Q5T754	118 aa		2.39	□□□□□ -2.03
DDB1-222	ENST00000543627	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.29	□□□□□ -2.04
DDB1-222	ENST00000543627	KRTAP5-11	Q6L8G4	156 aa		2.28	□□□□□ -2.04
DDB1-222	ENST00000543627	PHGR1	C9JFL3	82 aa		2.17	□□□□□ -2.06
DDB1-222	ENST00000543627	KRTAP21-2	Q3LI59	83 aa		2.16	□□□□□ -2.06
DDB1-222	ENST00000543627	KRTAP4-4	Q9BYR3	166 aa		2.07	□□□□□ -2.08
DDB1-222	ENST00000543627	PRM1	P04553	51 aa		1.96	□□□□□ -2.1
DDB1-222	ENST00000543627	MUC19	Q7Z5P9	8384 aa		1.84	□□□□□ -2.11
DDB1-222	ENST00000543627	KRTAP21-1	Q3LI58	79 aa		1.64	□□□□□ -2.15
DDB1-222	ENST00000543627	MUC16	Q8WXI7	14507 aa		1.25	□□□□□ -2.21

Retrieved 78 of 20,778 RNA–protein pairs in 212 ms