RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-222ENST00000543627 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.9□□□□□ -0.56e-9■■■■■ 58.7
DDB1-222ENST00000543627 U2AF2P26368 475 aaKnown RBP eCLIP12.37□□□□□ -0.435e-14■■■■■ 54.8
DDB1-222ENST00000543627 SUB1P53999 127 aaKnown RBP eCLIP8.42□□□□□ -1.061e-6■■■■■ 30.7
DDB1-222ENST00000543627 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.11□□□□□ -0.791e-6■■■■■ 28.8
DDB1-222ENST00000543627 SF3B1O75533 1304 aaKnown RBP eCLIP12.03□□□□□ -0.487e-6■■■■■ 28.7
DDB1-222ENST00000543627 METAP2P50579 478 aaKnown RBP eCLIP12.77□□□□□ -0.371e-6■■■■■ 26.8
DDB1-222ENST00000543627 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.53■□□□□ 0.41e-23■■■■□ 26.7
DDB1-222ENST00000543627 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.22□□□□□ -0.935e-12■■■■□ 24.8
DDB1-222ENST00000543627 HNRNPMP52272 730 aaKnown RBP eCLIP17.31■□□□□ 0.362e-7■■■■□ 24.8
DDB1-222ENST00000543627 DDX3XO00571 662 aaKnown RBP eCLIP11.4□□□□□ -0.582e-22■■■■□ 23.7
DDB1-222ENST00000543627 RPS3P23396 243 aaKnown RBP eCLIP10.73□□□□□ -0.699e-7■■■■□ 22.9
DDB1-222ENST00000543627 PPIGQ13427 754 aaKnown RBP eCLIP12.54□□□□□ -0.42e-12■■■■□ 22.1
DDB1-222ENST00000543627 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.52□□□□□ -0.416e-7■■■■□ 21.2
DDB1-222ENST00000543627 FXR2P51116 673 aaKnown RBP eCLIP12.31□□□□□ -0.442e-8■■■□□ 18.3
DDB1-222ENST00000543627 G3BP1Q13283 466 aaKnown RBP eCLIP13.72□□□□□ -0.216e-9■■■□□ 17.2
DDB1-222ENST00000543627 FXR1P51114 621 aaKnown RBP eCLIP12.51□□□□□ -0.412e-6■■■□□ 16.8
DDB1-222ENST00000543627 EFTUD2Q15029 972 aaKnown RBP eCLIP10.62□□□□□ -0.717e-7■■■□□ 16.2
DDB1-222ENST00000543627 AQRO60306 1485 aaKnown RBP eCLIP19.17■□□□□ 0.669e-7■■■□□ 14.7
DDB1-222ENST00000543627 FMR1Q06787 632 aaKnown RBP eCLIP13.73□□□□□ -0.217e-8■■□□□ 13.9
DDB1-222ENST00000543627 RBFOX2O43251 390 aaKnown RBP eCLIP8.55□□□□□ -1.047e-7■■□□□ 13.4
DDB1-222ENST00000543627 YBX3P16989 372 aaKnown RBP eCLIP14.32□□□□□ -0.122e-11■■□□□ 12.5
DDB1-222ENST00000543627 SF3B4Q15427 424 aaKnown RBP eCLIP10.01□□□□□ -0.818e-11■■□□□ 12.1
DDB1-222ENST00000543627 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.69■□□□□ 0.265e-11■■□□□ 11.4
DDB1-222ENST00000543627 SND1Q7KZF4 910 aaKnown RBP eCLIP11.48□□□□□ -0.579e-7■□□□□ 10.4
DDB1-222ENST00000543627 EWSR1Q01844 656 aaKnown RBP eCLIP8.12□□□□□ -1.111e-6■□□□□ 10.3
DDB1-222ENST00000543627 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.42□□□□□ -0.589e-7■□□□□ 9.6
DDB1-222ENST00000543627 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.38□□□□□ -0.272e-11■□□□□ 9.4
DDB1-222ENST00000543627 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.37□□□□□ -0.593e-7■□□□□ 9.3
DDB1-222ENST00000543627 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.38□□□□□ -0.751e-6■□□□□ 8.7
DDB1-222ENST00000543627 PRPF4O43172 522 aaKnown RBP eCLIP10.5□□□□□ -0.733e-7■□□□□ 8.7
DDB1-222ENST00000543627 NCBP2P52298 156 aaKnown RBP eCLIP10.23□□□□□ -0.774e-6■□□□□ 8.1
DDB1-222ENST00000543627 U2AF1Q01081 240 aaKnown RBP eCLIP14.81□□□□□ -0.043e-7■□□□□ 8
Retrieved 32 of 32 RNA–protein pairs in 27.5 ms