RNA–Protein interactions for RNA: ENST00000541363.5

HMGA2-210, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 8,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-210ENST00000541363 KRTAP20-1Q3LI63 56 aa4.2□□□□□ -1.74
HMGA2-210ENST00000541363 KRTAP6-2Q3LI66 62 aa4.2□□□□□ -1.74
HMGA2-210ENST00000541363 KRTAP9-2Q9BYQ4 174 aa4.17□□□□□ -1.74
HMGA2-210ENST00000541363 HYDINQ4G0P3 5121 aa4.1□□□□□ -1.75
HMGA2-210ENST00000541363 RYR1P21817 5038 aa4.1□□□□□ -1.75
HMGA2-210ENST00000541363 LPAP08519 4548 aa4.09□□□□□ -1.75
HMGA2-210ENST00000541363 RYR3Q15413 4870 aa4.06□□□□□ -1.76
HMGA2-210ENST00000541363 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
HMGA2-210ENST00000541363 KRTAP9-6A0A140TA67 174 aa4.01□□□□□ -1.77
HMGA2-210ENST00000541363 LCE4AQ5TA78 99 aa3.99□□□□□ -1.77
HMGA2-210ENST00000541363 KRTAP19-7Q3SYF9 63 aa3.96□□□□□ -1.77
HMGA2-210ENST00000541363 KRTAP6-1Q3LI64 71 aa3.95□□□□□ -1.78
HMGA2-210ENST00000541363 MUC17Q685J3 4493 aa3.94□□□□□ -1.78
HMGA2-210ENST00000541363 RYR2Q92736 4967 aa3.93□□□□□ -1.78
HMGA2-210ENST00000541363 KRTAP19-2Q3LHN2 52 aa3.89□□□□□ -1.79
HMGA2-210ENST00000541363 SYNE2Q8WXH0 6885 aaKnown RBP3.87□□□□□ -1.79
HMGA2-210ENST00000541363 KRTAP9-7A8MTY7 169 aa3.87□□□□□ -1.79
HMGA2-210ENST00000541363 KRTAP2-2Q9BYT5 123 aa3.86□□□□□ -1.79
HMGA2-210ENST00000541363 KIAA1109Q2LD37 5005 aa3.77□□□□□ -1.81
HMGA2-210ENST00000541363 KRTAP9-9Q9BYP9 154 aa3.77□□□□□ -1.81
HMGA2-210ENST00000541363 HERC1Q15751 4861 aa3.76□□□□□ -1.81
HMGA2-210ENST00000541363 KRTAP6-3Q3LI67 103 aa3.76□□□□□ -1.81
HMGA2-210ENST00000541363 LRP2P98164 4655 aa3.75□□□□□ -1.81
HMGA2-210ENST00000541363 HERC2O95714 4834 aa3.72□□□□□ -1.81
HMGA2-210ENST00000541363 KMT2CQ8NEZ4 4911 aaKnown RBP3.67□□□□□ -1.82
HMGA2-210ENST00000541363 EPPK1P58107 5090 aaKnown RBP3.65□□□□□ -1.83
HMGA2-210ENST00000541363 LCE2AQ5TA79 106 aaPredicted RBP3.64□□□□□ -1.83
HMGA2-210ENST00000541363 KRTAP9-6A8MVA2 160 aa3.61□□□□□ -1.83
HMGA2-210ENST00000541363 KRTAP4-11Q9BYQ6 195 aa3.59□□□□□ -1.83
HMGA2-210ENST00000541363 BIRC6Q9NR09 4857 aa3.58□□□□□ -1.84
HMGA2-210ENST00000541363 PCLOQ9Y6V0 5065 aa3.56□□□□□ -1.84
HMGA2-210ENST00000541363 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.51□□□□□ -1.85
HMGA2-210ENST00000541363 KRTAP20-2Q3LI61 65 aa3.5□□□□□ -1.85
HMGA2-210ENST00000541363 SYNE1Q8NF91 8797 aaKnown RBP3.49□□□□□ -1.85
HMGA2-210ENST00000541363 ABCA13Q86UQ4 5058 aa3.49□□□□□ -1.85
HMGA2-210ENST00000541363 FSIP2Q5CZC0 6907 aa3.42□□□□□ -1.86
HMGA2-210ENST00000541363 HMCN2Q8NDA2 5059 aa3.3□□□□□ -1.88
HMGA2-210ENST00000541363 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
HMGA2-210ENST00000541363 OBSCNQ5VST9 7968 aa3.2□□□□□ -1.9
HMGA2-210ENST00000541363 MUC2Q02817 5179 aa3.19□□□□□ -1.9
HMGA2-210ENST00000541363 FAT4Q6V0I7 4981 aa3.18□□□□□ -1.9
HMGA2-210ENST00000541363 UBR4Q5T4S7 5183 aa3.17□□□□□ -1.9
HMGA2-210ENST00000541363 RNF213Q63HN8 5207 aa3.15□□□□□ -1.9
HMGA2-210ENST00000541363 KRTAP4-6Q9BYQ5 205 aa3.11□□□□□ -1.91
HMGA2-210ENST00000541363 KRTAP4-12Q9BQ66 201 aa3.1□□□□□ -1.91
HMGA2-210ENST00000541363 KRTAP4-2Q9BYR5 136 aa3.1□□□□□ -1.91
HMGA2-210ENST00000541363 MACF1Q9UPN3 7388 aaKnown RBP2.96□□□□□ -1.93
HMGA2-210ENST00000541363 DSTQ03001 7570 aaKnown RBP2.9□□□□□ -1.94
HMGA2-210ENST00000541363 KRTAP5-4Q6L8H1 288 aa2.85□□□□□ -1.95
HMGA2-210ENST00000541363 KRTAP5-9P26371 169 aa2.84□□□□□ -1.95
HMGA2-210ENST00000541363 NEBP20929 6669 aa2.79□□□□□ -1.96
HMGA2-210ENST00000541363 KRTAP5-5Q701N2 237 aaPredicted RBP2.76□□□□□ -1.97
HMGA2-210ENST00000541363 KMT2DO14686 5537 aa2.75□□□□□ -1.97
HMGA2-210ENST00000541363 USH2AO75445 5202 aa2.74□□□□□ -1.97
HMGA2-210ENST00000541363 GPR98Q8WXG9 6306 aa2.72□□□□□ -1.97
HMGA2-210ENST00000541363 FCGBPQ9Y6R7 5405 aaPredicted RBP2.63□□□□□ -1.99
HMGA2-210ENST00000541363 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
HMGA2-210ENST00000541363 SSPOA2VEC9 5147 aa2.49□□□□□ -2.01
HMGA2-210ENST00000541363 MDN1Q9NU22 5596 aa2.49□□□□□ -2.01
HMGA2-210ENST00000541363 KRTAP5-3Q6L8H2 238 aa2.43□□□□□ -2.02
HMGA2-210ENST00000541363 PHGR1C9JFL3 82 aa2.41□□□□□ -2.02
HMGA2-210ENST00000541363 MUC12Q9UKN1 5478 aa2.38□□□□□ -2.03
HMGA2-210ENST00000541363 MUC5ACP98088 5654 aa2.22□□□□□ -2.05
HMGA2-210ENST00000541363 KRTAP5-10Q6L8G5 202 aa2.21□□□□□ -2.06
HMGA2-210ENST00000541363 KRTAP5-2Q701N4 177 aa2.18□□□□□ -2.06
HMGA2-210ENST00000541363 KRTAP5-8O75690 187 aa2.14□□□□□ -2.07
HMGA2-210ENST00000541363 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
HMGA2-210ENST00000541363 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
HMGA2-210ENST00000541363 HMCN1Q96RW7 5635 aa1.96□□□□□ -2.1
HMGA2-210ENST00000541363 KRTAP5-1Q6L8H4 278 aa1.95□□□□□ -2.1
HMGA2-210ENST00000541363 MUC5BQ9HC84 5762 aaPredicted RBP1.95□□□□□ -2.1
HMGA2-210ENST00000541363 AHNAK2Q8IVF2 5795 aa1.87□□□□□ -2.11
HMGA2-210ENST00000541363 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.83□□□□□ -2.12
HMGA2-210ENST00000541363 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
HMGA2-210ENST00000541363 AHNAKQ09666 5890 aaKnown RBP1.69□□□□□ -2.14
HMGA2-210ENST00000541363 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
HMGA2-210ENST00000541363 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 10.8 ms